View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_15 (Length: 458)
Name: NF20362_low_15
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 331605 - 332053
Alignment:
| Q |
1 |
gtttctttcttggttcttgaaaatgtatatatgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatggttggaa |
100 |
Q |
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| T |
331605 |
gtttctttcttggttcttgaaaatgtatatatgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatggttggaa |
331704 |
T |
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| Q |
101 |
catgccaataagttttgcaaatccttcatcaatcatcatcacactgaggaaaatcttgaagcaggttagttggtttgcattagtacgttatatatgattc |
200 |
Q |
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| T |
331705 |
catgccaataagttttgcaaatccttcttcaatcatcatcacactgaggaaaatcttgaagcaggttagttggttttcattagtacgttatatatgattc |
331804 |
T |
|
| Q |
201 |
atgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaatgtcagcagtatgcaacaat |
300 |
Q |
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| T |
331805 |
atgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaatgtcagcagtatgcaacaag |
331904 |
T |
|
| Q |
301 |
gacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactattacctcctgcataaacagac |
400 |
Q |
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| T |
331905 |
gacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactattacctcctgcataaacagac |
332004 |
T |
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| Q |
401 |
atggagggtgcagcagcaatcccaaacttgaagctgatcatgatgatgt |
449 |
Q |
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| T |
332005 |
atggagggtgcagcagcaatcccaaacttgaagctgatcatgaagatgt |
332053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 1107326 - 1107264
Alignment:
| Q |
74 |
ttctctgatattgatgaatggttggaacatgccaataagttttgcaaatccttcatcaatcat |
136 |
Q |
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| T |
1107326 |
ttctctgatattgttgaatggttggaacatgccaataagtattgcaaatccttcttcaatcat |
1107264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 11250477 - 11250617
Alignment:
| Q |
31 |
atgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatggttggaacatgccaataagttttgcaaatccttcatc |
130 |
Q |
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|||||||||||||||||| ||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11250477 |
atgtgatcagagattaggtatgacctacgttgaaaacaattgcttctttgatattgatgaatggttggaacatgccaataagttttgcaaatccttca-- |
11250574 |
T |
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| Q |
131 |
aatcatcatcacactgaggaaaatcttgaagcaggttagttggtttg |
177 |
Q |
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| T |
11250575 |
----atcatcacactgaggaaaatcttgaagccggttagttggtttg |
11250617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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