View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20362_low_16 (Length: 426)
Name: NF20362_low_16
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 48527189 - 48526791
Alignment:
| Q |
7 |
attatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48527189 |
attatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagc |
48527090 |
T |
|
| Q |
107 |
aacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48527089 |
aacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttctagaagaaacaaattatatgttgaggtaggg |
48526990 |
T |
|
| Q |
207 |
gacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacccggtagtgagattg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48526989 |
gacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacctggtagtgagattg |
48526890 |
T |
|
| Q |
307 |
cttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48526889 |
cttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtat |
48526791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 7222574 - 7222175
Alignment:
| Q |
7 |
attatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagc |
106 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
7222574 |
attatgatgccggggacaatgtgaaatatgggctaccaatggcattcacagttactacattatcatgggcagcaatattttataaaacagaatttgaagc |
7222475 |
T |
|
| Q |
107 |
aacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtaggg |
206 |
Q |
| |
|
||| || |||||||||||||||||| |||| || | |||||| || ||||||||| | ||| |||||| |||||| | ||||||||| ||||||||| |
|
|
| T |
7222474 |
aactaatgaaatgggaaatattcaaaatgccattagatggggtactgattattttctgaaaactagttcccaaagaaatagattatatgtagaggtaggg |
7222375 |
T |
|
| Q |
207 |
gacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaacacacccggtagtgagattg |
306 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||| ||| | |||||| | ||||||||||||||||| || | |||||||| |
|
|
| T |
7222374 |
gacccagttgatgatcaccattgttgggcaccaccggaaaatatgaagacaaagagaacagttaaattaattgatagtaacacacctggcactgagattg |
7222275 |
T |
|
| Q |
307 |
cttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctcaacaaagcaaaattggtatg |
406 |
Q |
| |
|
| ||||||| |||| ||||||||| ||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
7222274 |
cagctgaaacttctgctgctatggctgcttcttccattgtttttaggcatgttgatcccaaatattctcgccgtctcctcaataaagcaaaattggtatg |
7222175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 188 - 399
Target Start/End: Original strand, 50305342 - 50305553
Alignment:
| Q |
188 |
attatatgttgaggtaggggacccagaggaagatcatcattgttgggctccaccagaaaaaatgaagacaaaaagatcggttaaagtcattgatagtaac |
287 |
Q |
| |
|
|||||||||| |||||||||||| || || ||||| | ||||||||| |||||||||| ||||||||||| ||| | |||| | ||||| |||||| |
|
|
| T |
50305342 |
attatatgttaaggtaggggaccgagttgatgatcaccgttgttgggcaccaccagaaagtatgaagacaaagagaacatataaattaattgacagtaac |
50305441 |
T |
|
| Q |
288 |
acacccggtagtgagattgcttctgaaacggctgcagctatggcttcttcttccattgtttttagacatactgatcgtaaatatgctcgtcgtctcctca |
387 |
Q |
| |
|
||||||||| | ||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
50305442 |
acacccggttttaagattgcagctgaaacttctgctgttatggctacttcttccattgtttttagacatgttgatcgtaaatatgctcgtcatctcctta |
50305541 |
T |
|
| Q |
388 |
acaaagcaaaat |
399 |
Q |
| |
|
| |||||||||| |
|
|
| T |
50305542 |
ataaagcaaaat |
50305553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 50304083 - 50304211
Alignment:
| Q |
74 |
ggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagt |
173 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| || |||||||| ||| |||||||| | ||| |||| |
|
|
| T |
50304083 |
ggctgcaatattttacaaaactgaatttgaagcaacaaatgaaataggaaatattcaaaatgttattaaatggggtacatattattttctgaaaactagc |
50304182 |
T |
|
| Q |
174 |
tgtagaagaaacaaattatatgttgaggt |
202 |
Q |
| |
|
| ||||||| | |||||||||| |||| |
|
|
| T |
50304183 |
tccggaagaaatagattatatgttaaggt |
50304211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 50303815 - 50303873
Alignment:
| Q |
24 |
aatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaat |
82 |
Q |
| |
|
|||||||||||| || |||||||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
50303815 |
aatgtgaaatataggttaccaatggcattcacaattactacattattatgggctgcaat |
50303873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 41915316 - 41915365
Alignment:
| Q |
9 |
tatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgt |
58 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
41915316 |
tatgatgcaggggataatgtgaaatttgggttaccaatggcatttactgt |
41915365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University