View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_18 (Length: 414)
Name: NF20362_low_18
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 35742374 - 35742753
Alignment:
| Q |
18 |
aggaggagcaaaatcaaaatattcaaattctttacataatacaaaatgaagatttttaagtaacggacagccagaaataagactctcgaatgcaccgggc |
117 |
Q |
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| T |
35742374 |
aggaggagcaaaatcaaaatattcaaattctttacataatacaaaatgaagatttttaagtaacggacagccagaaataagactctcgaatgcaccgggc |
35742473 |
T |
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| Q |
118 |
tcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtca |
217 |
Q |
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| T |
35742474 |
tcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcaggtggaattgacaagtcaaatcctaaaaacttagagtacgtca |
35742573 |
T |
|
| Q |
218 |
attccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaat |
317 |
Q |
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| T |
35742574 |
attccttacaag---ggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaat |
35742670 |
T |
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| Q |
318 |
cggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
400 |
Q |
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| T |
35742671 |
cggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 70 - 398
Target Start/End: Original strand, 35748794 - 35749116
Alignment:
| Q |
70 |
tttttaagtaacggacagccagaaataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagaga |
169 |
Q |
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| T |
35748794 |
ttttcaagtaatggacagccagaaataagaccctcaagtgcaccggactcgaatgtaacattagataagtgaagattaagcaatcttttaaagcctcaga |
35748893 |
T |
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| Q |
170 |
aatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgt |
269 |
Q |
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| T |
35748894 |
aatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgag------gacagtatatggcatttgatcgacatgtgt |
35748987 |
T |
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| Q |
270 |
ttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcatta |
369 |
Q |
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| T |
35748988 |
tccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaattatgatcttgaaattgtagtcataa |
35749087 |
T |
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| Q |
370 |
gatatgaaaagaccaaacttatctatcgg |
398 |
Q |
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| T |
35749088 |
ggtatgaaaagatgaaacttatgtatcgg |
35749116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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