View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_24 (Length: 361)
Name: NF20362_low_24
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_24 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 64 - 361
Target Start/End: Original strand, 43645701 - 43646009
Alignment:
| Q |
64 |
tctctaattatttactccaaattaaataattctgggacaa-----------tactagattattcatacatttaaatcgaaatcagaagtactatagacaa |
152 |
Q |
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| T |
43645701 |
tctctaattatttactccaaattaaataattctgggacaaaagtgaaacaatactagattattcatacatttaaatcgaaatcagaagtactatagacaa |
43645800 |
T |
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| Q |
153 |
agtgtaacagcgtcacaaggacaacacaattattcnnnnnnnntctcattattactccattattattgtgcagtagagtagctggctggcaggcaacgcg |
252 |
Q |
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| T |
43645801 |
agtgtaacagcgtcacaaggacaacacaattattcaaaaaaaatctcattattactccattattattgtgcagtagagtagctggctggcaggcaacgcg |
43645900 |
T |
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| Q |
253 |
tatactcaatagttggaattggaataaattggaagaaggtccttaaatttctcatgaagttgggttttgtaaaaaacatatactaaacctcactcacacc |
352 |
Q |
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| T |
43645901 |
tatactcaatagttggaattggaataaattggaagaaggtccttaaatttctcatgaagttgggttttgtaaaaaacatatactaaacctcactcacacc |
43646000 |
T |
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| Q |
353 |
tccaaaatc |
361 |
Q |
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| T |
43646001 |
tccaaaatc |
43646009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 43645655 - 43645683
Alignment:
| Q |
18 |
gatagacccattgtttatttactatcacc |
46 |
Q |
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| T |
43645655 |
gatagacccattgtttatttactatcacc |
43645683 |
T |
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