View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_25 (Length: 350)
Name: NF20362_low_25
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_25 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 34 - 335
Target Start/End: Original strand, 13110413 - 13110715
Alignment:
| Q |
34 |
ttatatcgattcctaatcgaaattgagcataatatgatagcaattatgcacctcccaacagagtctcttttgggcctagtagttccaag-gatgtgaagc |
132 |
Q |
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| T |
13110413 |
ttatatcgattcctaatcgaaattgagcataatatgatagcaattatgcacctcccaacagagtctcttttgggcctagtagttccaagtgatgtgaagc |
13110512 |
T |
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| Q |
133 |
ccaaaataaatgtctcaacttaaaacatgaaagagtacttgtctcttacttatccattaatctgtttgagattatccatgtttcattaaagcaattggag |
232 |
Q |
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| T |
13110513 |
ccaaaataaatgtctcaacttaaaacatgaaagagtacttgtctcttactcatccattaatctgtttgagattatccatgtttcattaaagcaattagag |
13110612 |
T |
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| Q |
233 |
tattggtgtatataagcttggttaatattatgtttcgtaggcaatgtataacacattttttagtggttgtatcatgagttctaacttaagatagctgcta |
332 |
Q |
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| T |
13110613 |
tattggtgtacataagcttggttaatattatgtttcgtaggcaatgtataacacattttttagtggttgtatcatgagttctaacttaagatagctgcta |
13110712 |
T |
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| Q |
333 |
tat |
335 |
Q |
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||| |
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| T |
13110713 |
tat |
13110715 |
T |
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Target: scaffold0025 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 74 - 335
Target Start/End: Complemental strand, 152572 - 152313
Alignment:
| Q |
74 |
caattatgcacctcccaacagagtctcttttgggcctagtagttccaaggatgtgaagcccaaaataaatgtctcaacttaaaacatgaaagagtacttg |
173 |
Q |
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| T |
152572 |
caattatgcacctcccat-agagtctcttttgggcctagtagttccaaggatgtaaagcccaaaataaatgtctcaacttaaaacatgaaagagtacttg |
152474 |
T |
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| Q |
174 |
tctcttacttatccattaatctgtttgagattatccatgtttcattaaagcaattggagtattggtgtatataagcttggttaatattatgtttcgtagg |
273 |
Q |
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| T |
152473 |
tctcttactcatccattaatctgtttgagattatccatgtttcattaaagcaattgaagtattggtgtacataagcttggttaatattatgtttcgtagg |
152374 |
T |
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| Q |
274 |
caatgtataacacattttttagtggttgtatcatgagttctaacttaagatagctgctatat |
335 |
Q |
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| T |
152373 |
caatgtataacacat-ttttagtggttgtataatgagttctgacttaagatagctgctatat |
152313 |
T |
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