View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_26 (Length: 333)
Name: NF20362_low_26
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 2282804 - 2282478
Alignment:
| Q |
1 |
ttgcccccaacaatcttttttgaaatataaagagactttagtgtataatgcaatctctaaaaatacaaccaaatttagattaatcttgtgattgtttatc |
100 |
Q |
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| T |
2282804 |
ttgcccccaacaatcttttttgaaatataaagagactttagtgtataatgcaatctctaaaaatacaaccaaatttagattaatcttgtgattgtttatc |
2282705 |
T |
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| Q |
101 |
aaatttgtcaaccacccattttgaatttgattcataaagttaaaatatatgcaaacaagttgatatttatcaaataaactgagaggatccattttctaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2282704 |
aaatttgtcaaccacccattttgaatttgattcataaagttaaaatatatgcaaacaagttgatatttatcaaataaactgagaggatccattttctaca |
2282605 |
T |
|
| Q |
201 |
attgtagcttatatcgtgttgtacatcggtaccctnnnnnnntgtaatctaccacaaaaccaaacatagcttaaaacacttgttggtcacccaccataat |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2282604 |
attgtagcttatatcgtgttgtacatcggtaccctaaaaaaatgtaatctaccacaaaaccaaacatagcttaaaacacttgttggtcacccaccataat |
2282505 |
T |
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| Q |
301 |
gtgaactagtcgagatacctatgctac |
327 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
2282504 |
gtgaactagtcgagatacccatgctac |
2282478 |
T |
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