View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20362_low_28 (Length: 328)

Name: NF20362_low_28
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20362_low_28
NF20362_low_28
[»] chr6 (3 HSPs)
chr6 (20-316)||(6321566-6321860)
chr6 (72-228)||(387719-387878)
chr6 (71-155)||(2133295-2133381)
[»] chr8 (8 HSPs)
chr8 (135-222)||(1155114-1155200)
chr8 (88-222)||(31128534-31128669)
chr8 (80-222)||(18806546-18806689)
chr8 (135-228)||(13629008-13629101)
chr8 (135-228)||(13729420-13729513)
chr8 (72-153)||(35893375-35893458)
chr8 (195-228)||(31226441-31226474)
chr8 (178-222)||(37673734-37673778)
[»] chr7 (8 HSPs)
chr7 (135-222)||(31330454-31330541)
chr7 (52-219)||(31027245-31027413)
chr7 (80-158)||(27334375-27334455)
chr7 (178-231)||(31322281-31322334)
chr7 (90-214)||(48615273-48615399)
chr7 (165-222)||(4958331-4958388)
chr7 (70-116)||(19594042-19594090)
chr7 (194-222)||(44441710-44441738)
[»] chr4 (9 HSPs)
chr4 (71-222)||(39055156-39055308)
chr4 (80-228)||(23359105-23359254)
chr4 (70-222)||(10180591-10180744)
chr4 (181-228)||(54018427-54018474)
chr4 (171-221)||(52199898-52199948)
chr4 (178-219)||(51655233-51655274)
chr4 (183-219)||(28909460-28909496)
chr4 (106-222)||(41115877-41115993)
chr4 (80-116)||(56263778-56263814)
[»] chr2 (7 HSPs)
chr2 (165-251)||(34375137-34375222)
chr2 (121-231)||(26312517-26312626)
chr2 (92-145)||(31050159-31050214)
chr2 (176-222)||(6710849-6710895)
chr2 (187-228)||(7868253-7868294)
chr2 (165-218)||(8798679-8798732)
chr2 (178-222)||(14772903-14772947)
[»] chr1 (13 HSPs)
chr1 (80-158)||(35604591-35604671)
chr1 (80-222)||(52353766-52353909)
chr1 (171-222)||(43822871-43822922)
chr1 (71-222)||(11120547-11120698)
chr1 (165-222)||(27544461-27544518)
chr1 (29-107)||(39864808-39864888)
chr1 (80-141)||(30056750-30056813)
chr1 (171-222)||(32851737-32851788)
chr1 (80-154)||(15727007-15727083)
chr1 (171-212)||(24555820-24555861)
chr1 (171-224)||(32451734-32451787)
chr1 (171-215)||(11449317-11449361)
chr1 (178-222)||(13984140-13984184)
[»] chr5 (8 HSPs)
chr5 (62-153)||(10696645-10696739)
chr5 (135-231)||(42551048-42551144)
chr5 (80-222)||(26675457-26675600)
chr5 (80-222)||(26947065-26947208)
chr5 (81-156)||(16770182-16770260)
chr5 (71-151)||(31932059-31932140)
chr5 (195-228)||(2970345-2970378)
chr5 (178-231)||(12593228-12593281)
[»] scaffold0017 (1 HSPs)
scaffold0017 (171-220)||(31782-31831)
[»] chr3 (3 HSPs)
chr3 (195-247)||(1559511-1559563)
chr3 (171-219)||(29950766-29950814)
chr3 (171-219)||(29999920-29999968)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 6321566 - 6321860
Alignment:
Q  20 ctaagaagtacaaggtctcaaataagtacactctctttgtgagtctctctccttttaaagattaaaatattgaaatataatgatatagttattgatatat 119  Q
    |||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  6321566 ctaataagcacaaggtctcaaataagtacactctttctgtgagtctctctccttttaaaaattaaaatattgaaatgtaatgatatagttattgatatat 6321665  T
Q  120 aattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgt 219  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6321666 aattagtggatcttgtttaagaaatttgtgtgaaatgctagatgagaagggttgagtgcttagtagatactagtgttaaaaaattataaatgagtgatgt 6321765  T
Q  220 gtaaatgtgtgatctattttaagtatctaaaattggatttcaccattgtgggtgccctaatgtcaattatccatggagacctgacttgcctatgtta 316  Q
    |||||  ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||    
T  6321766 gtaaa--tgtgatctattttaagtatctaaaattaggtttcaccattgtggatgccctaatgtcaattatccatggagacctgacttgtctaggtta 6321860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 387719 - 387878
Alignment:
Q  72 ttttaaagattaaaatattgaaa-tataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagagg 168  Q
    ||||||| ||||||| ||| ||| |||||| |||||  ||||||||||  | |||||||| | || |||||||||||||||||||||||| |||   | |    
T  387719 ttttaaatattaaaaaattaaaaatataataatataaagttattgatagttgattagtgggtcttatttaagaaatttgtgtgaaatgttggattgaatg 387818  T
Q  169 ggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
      |||| ||| ||  |||||||| | |||||||||||||||||||| ||||||| |||||    
T  387819 aattgagtgcctatcagatactactattaaaaaattataaatgagttatgtgtacatgtg 387878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 2133381 - 2133295
Alignment:
Q  71 cttttaaagattaaaatattgaaatataatgatat--agttattgatatataattagtggattttgtttaagaaatttgtgtgaaat 155  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||| ||||||| ||| | | |||||| | |||||||||||||    
T  2133381 cttttaaagattaaaatattaaaatgtaatgatatagagttattgatagataattaatgggtctcgtttaaaatatttgtgtgaaat 2133295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 1155200 - 1155114
Alignment:
Q  135 tttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||||||||||||||||| || |  | || ||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  1155200 tttaagaaatttgtgtgagatctgggttg-gagggattgaatgcttattagatactactattaaaaaattataaatgagtgatgtgta 1155114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 31128669 - 31128534
Alignment:
Q  88 attgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtag 185  Q
    |||||||||||||||||||  ||||||||||  | |||||| | | |  |||||||| |||||| || || |||| | |||| | ||||||||||| |||    
T  31128669 attgaaatataatgatataaagttattgatagtttattagtaggtctcatttaagaactttgtgagagat-ttaggttagagtgattgaatgcttattag 31128571  T
Q  186 atactagtgttaaaaaattataaatgagtgatgtgta 222  Q
     ||||| | ||||||||||||||||||||||||||||    
T  31128570 gtactactattaaaaaattataaatgagtgatgtgta 31128534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 18806689 - 18806546
Alignment:
Q  80 attaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatg 177  Q
    ||||||| |||||||||||||||||||  ||||||||||  | ||||||||||    ||||| |||||||||||| || | || |  ||| | | |||||    
T  18806689 attaaaaaattgaaatataatgatataaagttattgatagttgattagtggatcccatttaaaaaatttgtgtgagatct-aggtttgagtgatcgaatg 18806591  T
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
     ||| ||||||||| | |||||||||||||||| |||||||||||    
T  18806590 tttattagatactactattaaaaaattataaataagtgatgtgta 18806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 13629101 - 13629008
Alignment:
Q  135 tttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    |||||||| ||||| ||| ||||| | |  ||||| |||| | |||| ||||||||| | |||||||||||||||||| ||||||||| |||||    
T  13629101 tttaagaattttgtatgagatgttgggttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtg 13629008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 13729513 - 13729420
Alignment:
Q  135 tttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    |||||||| ||||| ||| ||||| | |  ||||| |||| | |||| ||||||||| | |||||||||||||||||| ||||||||| |||||    
T  13729513 tttaagaattttgtatgagatgttgggttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtg 13729420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 35893375 - 35893458
Alignment:
Q  72 ttttaaagattaaaatattgaaatataatgatat--agttattgatatataattagtggattttgtttaagaaatttgtgtgaa 153  Q
    |||||||||||||||| |||||||||||||||||  | ||||||||| || | || ||  |||||||||| |||||||| ||||    
T  35893375 ttttaaagattaaaattttgaaatataatgatataaaattattgatagatgactaatgtgttttgtttaaaaaatttgtctgaa 35893458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 31226474 - 31226441
Alignment:
Q  195 ttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    |||||||||||||||||||||||||||| |||||    
T  31226474 ttaaaaaattataaatgagtgatgtgtacatgtg 31226441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 37673778 - 37673734
Alignment:
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||| ||| ||||| | ||||||||||||||||||||||||||||    
T  37673778 cttattaggtactactattaaaaaattataaatgagtgatgtgta 37673734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 31330454 - 31330541
Alignment:
Q  135 tttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||||||||||||||||||||||| | |  ||||| |||| |||||| ||| |||||   ||||||||||||||||||||||||||||    
T  31330454 tttaagaaatttgtgtgaaatgttgggttggagggattgagtgcttattaggtactaccattaaaaaattataaatgagtgatgtgta 31330541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 31027245 - 31027413
Alignment:
Q  52 ctctttgtgagtctctctccttttaaagattaaaatattgaaatataatgatat--agttattgatatataattagtggattttgtttaagaaatttgtg 149  Q
    |||||| ||||||||  || ||||||||||||||||||  |||||| |||||||  ||||||||||| || ||||||| ||||| ||||| ||||||||     
T  31027245 ctctttttgagtctcaatcattttaaagattaaaatataaaaatattatgatataaagttattgatagatgattagtgaattttatttaaaaaatttgta 31027344  T
Q  150 tgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgt 219  Q
    | ||||  | ||| | | || ||||||||||| |||||||||   ||||||| |||||||| | ||||||    
T  31027345 t-aaatactggattaaaaggattgaatgcttattagatactaacattaaaaatttataaataaatgatgt 31027413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 27334375 - 27334455
Alignment:
Q  80 attaaaatattgaaatataatgatat--agttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgtt 158  Q
    |||||||||||||||| |||||||||  ||||||||||| || |||| ||| | ||||||| || ||||||||||| ||||    
T  27334375 attaaaatattgaaatgtaatgatatagagttattgatagatgattaatgggtcttgtttatgacatttgtgtgaagtgtt 27334455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 31322334 - 31322281
Alignment:
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtgtga 231  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||| || |||||    
T  31322334 cttattaggtactactgttaaaaaattataaatgagtgatgtgtacatatgtga 31322281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 48615399 - 48615273
Alignment:
Q  90 tgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagat 187  Q
    |||||| ||||||||||  |||||||||| || |||| ||||||  |||||||||||||||||||  || | | |  ||||  ||||||| ||| ||| |    
T  48615399 tgaaatgtaatgatataaagttattgatagatgattaatggattccgtttaagaaatttgtgtgaggtgctggcttggaggaattgaatgtttattaggt 48615300  T
Q  188 actagtgttaaaaaattataaatgagt 214  Q
    ||||  |||||||||||| ||||||||    
T  48615299 actaacgttaaaaaattaaaaatgagt 48615273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 4958331 - 4958388
Alignment:
Q  165 gaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    ||||| |||| || ||| ||||||||| | |||||||||||||||||| |||||||||    
T  4958331 gagggattgagtgtttattagatactactattaaaaaattataaatgaatgatgtgta 4958388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 19594042 - 19594090
Alignment:
Q  70 ccttttaaagattaaaatattgaaatataatgatat--agttattgata 116  Q
    |||||| |||||||||| ||||||||||||||||||  |||||||||||    
T  19594042 cctttttaagattaaaaaattgaaatataatgatataaagttattgata 19594090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 44441710 - 44441738
Alignment:
Q  194 gttaaaaaattataaatgagtgatgtgta 222  Q
    |||||||||||||||||||||||||||||    
T  44441710 gttaaaaaattataaatgagtgatgtgta 44441738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 39055156 - 39055308
Alignment:
Q  71 cttttaaagattaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagagg 168  Q
    ||||| || ||||||| ||| |||| ||||||||||  ||||||||||  | |||||||| |||  |||||||| ||||||||| || | || || ||||    
T  39055156 ctttttaatattaaaaaattaaaatgtaatgatataaagttattgatagttgattagtgggtttcatttaagaactttgtgtgagatctgagttg-gagg 39055254  T
Q  169 ggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    | || ||| |||| ||| ||||| | ||||||||||||||||||||||||||||    
T  39055255 gatttaatacttattaggtactaatattaaaaaattataaatgagtgatgtgta 39055308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 23359105 - 23359254
Alignment:
Q  80 attaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatg 177  Q
    ||||||| |||||||||| || |||||  ||||||||||  | ||| |||||| |  |||||||| ||||||||| || |  | || ||| | |||| ||    
T  23359105 attaaaaaattgaaatattataatataaagttattgatagttgatttgtggatctcatttaagaactttgtgtgagatctaggttg-gagtgattgagtg 23359203  T
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    |||| ||||||||| | |||||||||||||||||| ||||||||| |||||    
T  23359204 cttattagatactactattaaaaaattataaatgaatgatgtgtatatgtg 23359254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 10180744 - 10180591
Alignment:
Q  70 ccttttaaagattaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagag 167  Q
    |||||| || ||||||| ||||| || ||||||||||  ||||||||||  | ||| |||||| |  |||||||||||||||| | ||| ||| |  |||    
T  10180744 cctttttaatattaaaaaattgatatgtaatgatataaagttattgatagttgatt-gtggatctcatttaagaaatttgtgtaagatgctaggttggag 10180646  T
Q  168 gggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |  |||| | |||| ||| ||||| | ||||||||||||||||||||||| ||||    
T  10180645 gcattgagttcttattaggtactactattaaaaaattataaatgagtgatatgta 10180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 54018474 - 54018427
Alignment:
Q  181 agtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    ||||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  54018474 agtaggtactattgttaaaaagttataaatgagtgatgtgtacatgtg 54018427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 52199898 - 52199948
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgt 221  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||| ||||    
T  52199898 ttgaatgcttattaggtactactattaaaaaattataaatgagtgacgtgt 52199948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 51655233 - 51655274
Alignment:
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgt 219  Q
    |||| ||||||||| |||||||| ||||||||||||||||||    
T  51655233 cttattagatactactgttaaaatattataaatgagtgatgt 51655274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 28909496 - 28909460
Alignment:
Q  183 tagatactagtgttaaaaaattataaatgagtgatgt 219  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  28909496 tagatactactgttaaaaaattataaatgagcgatgt 28909460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 41115877 - 41115993
Alignment:
Q  106 agttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaatta 205  Q
    ||||||||||| || | |||| ||| | ||||||||| ||| ||||| ||||||| |  | ||| ||||||| ||| ||||||||| | || ||||| ||    
T  41115877 agttattgatagatgagtagttgatctcgtttaagaagtttttgtgagatgttaggtttgtgggattgaatgtttattagatactactatttaaaaacta 41115976  T
Q  206 taaatgagtgatgtgta 222  Q
    ||||| |||||| ||||    
T  41115977 taaataagtgatatgta 41115993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 56263778 - 56263814
Alignment:
Q  80 attaaaatattgaaatataatgatatagttattgata 116  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  56263778 attaaaaaattgaaatataacgatatagttattgata 56263814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 34375137 - 34375222
Alignment:
Q  165 gaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtgtgatctattttaagtatctaaaa 251  Q
    ||||| |||||| |||| ||| ||||| | |||||||||||||||| ||||||||||| ||||| |||||| |||||||||| ||||    
T  34375137 gagggattgaattcttattaggtactactattaaaaaattataaataagtgatgtgtacatgtgagatcta-tttaagtatccaaaa 34375222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 26312517 - 26312626
Alignment:
Q  121 attagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtg 220  Q
    |||||||| || | ||||| |||||||||||| || | || || ||||  |||| |||||| ||| ||||| | ||||||||||||||||||||||||||    
T  26312517 attagtgggttctatttaataaatttgtgtgagatctgagttg-gaggaattgagtgcttattaggtactactattaaaaaattataaatgagtgatgtg 26312615  T
Q  221 taaatgtgtga 231  Q
    || | ||||||    
T  26312616 tacacgtgtga 26312626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 31050214 - 31050159
Alignment:
Q  92 aaatataatgatatag--ttattgatatataattagtggattttgtttaagaaatt 145  Q
    |||| |||||||||||  ||||||||||||||||||||||||  ||||||||||||    
T  31050214 aaatgtaatgatatagagttattgatatataattagtggattccgtttaagaaatt 31050159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 6710895 - 6710849
Alignment:
Q  176 tgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||||| ||||||||| | ||||||||||||||||||||||| ||||    
T  6710895 tgcttattagatactactattaaaaaattataaatgagtgatctgta 6710849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 7868294 - 7868253
Alignment:
Q  187 tactagtgttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  7868294 tactattgttaaaaaattataaatgagtgatctgtacatgtg 7868253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 8798732 - 8798679
Alignment:
Q  165 gaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatg 218  Q
    ||||| |||| |||||| |||||| || | ||||||||||||||||||||||||    
T  8798732 gagggattgactgcttattagatattattattaaaaaattataaatgagtgatg 8798679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 14772947 - 14772903
Alignment:
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||| ||| ||||| |||||||||||||||||||| |||||||||    
T  14772947 cttattaggtactattgttaaaaaattataaatgaatgatgtgta 14772903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 35604671 - 35604591
Alignment:
Q  80 attaaaatattgaaatataatgatatag--ttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgtt 158  Q
    |||||||||||||||| |||||||||||  ||||||||| || || | ||||| |||||||||| |||||||||| |||||    
T  35604671 attaaaatattgaaatgtaatgatatagagttattgataaatgataaatggatcttgtttaagacatttgtgtgagatgtt 35604591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 52353909 - 52353766
Alignment:
Q  80 attaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatg 177  Q
    ||||||| |||||||| ||||||||||  ||||||||||  | |||||||| || | |||||||||||||||||| ||| | | |  ||||| | || ||    
T  52353909 attaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgggttctatttaagaaatttgtgtgagatgct-gcttggagggatcgagtg 52353811  T
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||| ||| ||||  | |||||||||||||||| |||||||||||    
T  52353810 cttattaggtactgctattaaaaaattataaattagtgatgtgta 52353766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 43822871 - 43822922
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||| |||||| ||||||||| | ||||||||||||||||||||||||||||    
T  43822871 ttgagtgcttattagatactactattaaaaaattataaatgagtgatgtgta 43822922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 11120547 - 11120698
Alignment:
Q  71 cttttaaagattaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagagg 168  Q
    ||||| || ||||||| ||| |||||||||||||||  ||||||||||  | ||||||||||| | |||||||| ||||||||| || |  | || |||     
T  11120547 ctttttaatattaaaa-attaaaatataatgatataaagttattgatagttgattagtggattgtatttaagaactttgtgtgagatctgcgttg-gagt 11120644  T
Q  169 ggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
      |||| || ||| ||||||||| | ||||| ||||||||||||||||||||||    
T  11120645 aattgagtgtttattagatactactattaaagaattataaatgagtgatgtgta 11120698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 27544461 - 27544518
Alignment:
Q  165 gaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    ||||| |||| |||||| ||||| ||| | ||||||||||||||||||||||||||||    
T  27544461 gagggattgagtgcttattagatgctattattaaaaaattataaatgagtgatgtgta 27544518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 39864888 - 39864808
Alignment:
Q  29 acaaggtctcaaataagtacactctctttgtga--gtctctctccttttaaagattaaaatattgaaatataatgatatag 107  Q
    |||||||||||||||||||  |||||| |  ||  ||| | ||| |||||||||||||||||||||||| |||||||||||    
T  39864888 acaaggtctcaaataagtatcctctctctccgaatgtcccactcattttaaagattaaaatattgaaatgtaatgatatag 39864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 30056813 - 30056750
Alignment:
Q  80 attaaaatattgaaatataatgatat--agttattgatatataattagtggattttgtttaaga 141  Q
    |||| |||||||||||||||||||||  |||||||||||||  |||| || |||||||||||||    
T  30056813 attataatattgaaatataatgatatagagttattgatataggattaatgaattttgtttaaga 30056750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 32851788 - 32851737
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||| |||||| ||||||||| | |||||||||| |||||||||||||||||    
T  32851788 ttgattgcttattagatactactattaaaaaattgtaaatgagtgatgtgta 32851737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 15727083 - 15727007
Alignment:
Q  80 attaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaa 154  Q
    |||| |||||||||||| |||||||||  |||||||||| ||||||| || || | |||||| ||| ||||||||||    
T  15727083 attagaatattgaaatacaatgatatacagttattgatagataattaatgtatctcgtttaaaaaaattgtgtgaaa 15727007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 24555861 - 24555820
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatga 212  Q
    ||||||||||| ||||||||| | ||||||||||||||||||    
T  24555861 ttgaatgcttattagatactactattaaaaaattataaatga 24555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 32451787 - 32451734
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaa 224  Q
    ||||||||||| ||| || || | |||||||||||||||| |||||||||||||    
T  32451787 ttgaatgcttattaggtattactattaaaaaattataaattagtgatgtgtaaa 32451734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 11449317 - 11449361
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtg 215  Q
    ||||||| ||| ||| ||||| |||||||||||||||||||||||    
T  11449317 ttgaatgattattaggtactattgttaaaaaattataaatgagtg 11449361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 13984140 - 13984184
Alignment:
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    |||| ||||||||| | ||||||||||||||||| ||||||||||    
T  13984140 cttattagatactactattaaaaaattataaatgtgtgatgtgta 13984184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 10696645 - 10696739
Alignment:
Q  62 gtctctctccttttaaagattaaaatattgaaatataatgatata---gttattgatatataattagtggattttgtttaagaaatttgtgtgaa 153  Q
    ||||| ||| ||||||||||||||||||| |||| ||||||||||   |||||||||| | ||||| | | ||| ||||||||||||| ||||||    
T  10696645 gtctcactctttttaaagattaaaatattaaaatgtaatgatatatgggttattgatagacaattaattggtttggtttaagaaatttttgtgaa 10696739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 42551144 - 42551048
Alignment:
Q  135 tttaagaaatttgtgtgaaatgttagatgagaggggttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtgtga 231  Q
    |||||||||||||||||| ||| ||| |  ||||| |||| |||||| ||  ||||| | |||||||||||||||||| ||||||||| | ||||||    
T  42551144 tttaagaaatttgtgtgagatgctaggtttgagggattgattgcttattatgtactattattaaaaaattataaatgaatgatgtgtacacgtgtga 42551048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 26675600 - 26675457
Alignment:
Q  80 attaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatg 177  Q
    ||||||| |||||| | | ||||||||  ||||||||||| | |||||||| | |  |||||||||||| ||||| || | || || || || || | ||    
T  26675600 attaaaaaattgaagtgtgatgatataaagttattgatatttgattagtgggtctaatttaagaaatttatgtgagatctgagttg-gaaggattaagtg 26675502  T
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    ||||  |||||||| | ||||||||||||||||||||||||||||    
T  26675501 cttataagatactactattaaaaaattataaatgagtgatgtgta 26675457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 26947208 - 26947065
Alignment:
Q  80 attaaaatattgaaatataatgatata--gttattgatatataattagtggattttgtttaagaaatttgtgtgaaatgttagatgagaggggttgaatg 177  Q
    ||||||| |||||| | | ||||||||  ||||||||||| | |||||||| | |  |||||||||||| ||||| || | || || || || || | ||    
T  26947208 attaaaaaattgaagtgtgatgatataaagttattgatatttgattagtgggtctaatttaagaaatttatgtgagatctgagttg-gaaggattaagtg 26947110  T
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgta 222  Q
    ||||  |||||||| | ||||||||||||||||||||||||||||    
T  26947109 cttataagatactactattaaaaaattataaatgagtgatgtgta 26947065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 16770260 - 16770182
Alignment:
Q  81 ttaaaatattgaaatataatgatatagttattgatatataattagtgg--att-ttgtttaagaaatttgtgtgaaatg 156  Q
    ||||||||||||| | |||| ||||||||||||||| |||||||| ||  ||| |||||||| |||||||| |||||||    
T  16770260 ttaaaatattgaattgtaataatatagttattgataaataattagcgggtattattgtttaaaaaatttgtatgaaatg 16770182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 31932059 - 31932140
Alignment:
Q  71 cttttaaagattaaaatattgaaatataatgata--tagttattgatatataattagtggattttgtttaagaaatttgtgtg 151  Q
    ||||||||||||||||| ||||||||||||||||  |||||||  ||| || || | |||||  |||||||||||||||||||    
T  31932059 cttttaaagattaaaat-ttgaaatataatgatacatagttatcaatagatgatcattggatactgtttaagaaatttgtgtg 31932140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 2970378 - 2970345
Alignment:
Q  195 ttaaaaaattataaatgagtgatgtgtaaatgtg 228  Q
    |||||||||||||||||||||||||||| |||||    
T  2970378 ttaaaaaattataaatgagtgatgtgtatatgtg 2970345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 12593228 - 12593281
Alignment:
Q  178 cttagtagatactagtgttaaaaaattataaatgagtgatgtgtaaatgtgtga 231  Q
    |||| ||||||||| | ||||||| |||||||||||||||||||| | ||||||    
T  12593228 cttattagatactactattaaaaagttataaatgagtgatgtgtacacgtgtga 12593281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 31831 - 31782
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgtg 220  Q
    ||||||||||| | ||||||| | |||| |||||||||||||||||||||    
T  31831 ttgaatgcttatttgatactactattaagaaattataaatgagtgatgtg 31782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 1559563 - 1559511
Alignment:
Q  195 ttaaaaaattataaatgagtgatgtgtaaatgtgtgatctattttaagtatct 247  Q
    ||||| |||||||||| ||||||||||| | ||||||||||||| ||| ||||    
T  1559563 ttaaacaattataaataagtgatgtgtacacgtgtgatctatttaaagaatct 1559511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 29950814 - 29950766
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgt 219  Q
    |||| |||||| ||||||||| | |||||||| ||||||||||||||||    
T  29950814 ttgagtgcttattagatactactattaaaaaaatataaatgagtgatgt 29950766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 29999968 - 29999920
Alignment:
Q  171 ttgaatgcttagtagatactagtgttaaaaaattataaatgagtgatgt 219  Q
    |||| |||||| ||||||||| | |||||||| ||||||||||||||||    
T  29999968 ttgagtgcttattagatactactattaaaaaaatataaatgagtgatgt 29999920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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