View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_3 (Length: 657)
Name: NF20362_low_3
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 28 - 361
Target Start/End: Original strand, 41826710 - 41827044
Alignment:
| Q |
28 |
gaatcatacgtaataatgagagtttacactatcaatcaatcataaccgttagatcattgaaaacgttcaactttttatcataatgttttaaaatcaaaca |
127 |
Q |
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| T |
41826710 |
gaatcatacgtaataatgagagtttacactatcaatcaatcataatcgttagatcattgaaaacattcaactttttatcataatgttttaaaatcaaaca |
41826809 |
T |
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| Q |
128 |
tgagattggttgtgacgtgctaacagtccaaacttttttacacttacagtaaattaaactctaatttaattacttaacatcaccaatata-ttagattaa |
226 |
Q |
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| T |
41826810 |
tgtgattggttgtgacgtgctaacagtccaaactcttttacacttacagtaaattaaactctaatttaattacttaacatcaccaatatatttagattaa |
41826909 |
T |
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| Q |
227 |
gcaaaattgaaattaccaaaaggaaatatggtggtggacatggtaagaaggaggaaaggtttgcgaccatgatcatctgaaagctggcccaaaagtggaa |
326 |
Q |
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| T |
41826910 |
gcaaaattgaaattaccaaaaggaaatatggtggtggacatggtaagaaggaggaaaggtttgcgaccatgatcatctgaaagctggcccaaaagtggaa |
41827009 |
T |
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| Q |
327 |
gtaccatcatcttgaaaattccagcaatctagaag |
361 |
Q |
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| T |
41827010 |
gtaccatcatcttgaaaattccagcaatctagaag |
41827044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 403 - 639
Target Start/End: Original strand, 41827086 - 41827322
Alignment:
| Q |
403 |
gttggttgatcgtatgaatttgtgataatacatactgtttcttgaaggccattaatgtaaatggctttggaacaagatgattgttgaggacataaagcag |
502 |
Q |
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| T |
41827086 |
gttggttgatcatatgaatttgtgataatacatactgtttcttgaaggccattaatgtaaatggctttggaacaagatgattgttgaggacataaagcag |
41827185 |
T |
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| Q |
503 |
tggttgtaacatcaacaagaacagaaactgtcatttcttcagcaatccaatgaatgcttagtggaagtaacaagtggaataatggtctcagctcaaagaa |
602 |
Q |
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| T |
41827186 |
tggttgtaacatcaacaagaacagaaactgtcatttcttcagcaatccaatgaatgcttagtggaagtaacaagtggaataatggtctcagctcaaagaa |
41827285 |
T |
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| Q |
603 |
accactccaccacgacatgtttcttagatgagatttg |
639 |
Q |
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| T |
41827286 |
accactccaccacgacatgtttcttagatgagatttg |
41827322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 424 - 639
Target Start/End: Original strand, 41820402 - 41820617
Alignment:
| Q |
424 |
gtgataatacatactgtttcttgaaggccattaatgtaaatggctttggaacaagatgattgttgaggacataaagcagtggttgtaacatcaacaagaa |
523 |
Q |
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| T |
41820402 |
gtgataatacatactgtttgttgaaggccattgatgtaaatagctttggagcaagatgattgttgagggcataaagcagtggttgtaacatcaacaagaa |
41820501 |
T |
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| Q |
524 |
cagaaactgtcatttcttcagcaatccaatgaatgcttagtggaagtaacaagtggaataatggtctcagctcaaagaaaccactccaccacgacatgtt |
623 |
Q |
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| T |
41820502 |
cagaaactgtcattgcttcagcaatccaatgaatgcttagtggaagtaacaagtgaaacaaaggcttcagctcaaagaaaccactccaccacgacatgtt |
41820601 |
T |
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| Q |
624 |
tcttagatgagatttg |
639 |
Q |
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||| |||||||||||| |
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| T |
41820602 |
tctgagatgagatttg |
41820617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 41820181 - 41820312
Alignment:
| Q |
230 |
aaattgaaattaccaaaaggaaatatggtggtggacatggtaagaaggaggaaaggtttgcgaccatgatcatctgaaagctggcccaaaagtggaagta |
329 |
Q |
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| T |
41820181 |
aaattgtaattaccaaaaggtattatactggtggatatggtaagaaggagtaaaggtttgcgaccgtgttcatctgaaagctgacccaaaaggggaagca |
41820280 |
T |
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| Q |
330 |
ccatcatcttgaaaattccagcaatctagaag |
361 |
Q |
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| T |
41820281 |
ccgccatcttgaaaattccagtaatctagaag |
41820312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 41820095 - 41820138
Alignment:
| Q |
190 |
aatttaattacttaacatcaccaatatattagattaagcaaaat |
233 |
Q |
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| T |
41820095 |
aatttaattacttagcatcaccaacatattagattaaccaaaat |
41820138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 4076104 - 4076065
Alignment:
| Q |
50 |
tttacactatcaatcaatcataaccgttagatcattgaaa |
89 |
Q |
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| T |
4076104 |
tttacactatcaatcaatcataatcgttagatcattgaaa |
4076065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 33657402 - 33657439
Alignment:
| Q |
53 |
acactatcaatcaatcataaccgttagatcattgaaaa |
90 |
Q |
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| T |
33657402 |
acactatcaatcaatcataaccgtcaaatcattgaaaa |
33657439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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