View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20362_low_32 (Length: 305)
Name: NF20362_low_32
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 43316047 - 43316252
Alignment:
| Q |
83 |
ggacaaacttctgacacacttgatgaacatatgagacaaaggttacgaattaaaaacaaagaacaaaggtgaaattgaaaaagtggtaataattacttgg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43316047 |
ggacaaacttctgacacacttgatgaacatatgagacaaaggttacgaattaaaaacaaagaacaaaggtgaaattgaaaaagtggtaataattacttgg |
43316146 |
T |
|
| Q |
183 |
aaaaagcctaagaacttcttaaattcnnnnnnntagaaagaccatcaataattagcctacaaagtacaaaggaacataataattcctagttttccatgct |
282 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43316147 |
aaaaagcctaagaacttcttaaattcaaaaaaatagaaagaccatcaataattaccctacaaagtacaaaggaacataataattcctagttttccatgct |
43316246 |
T |
|
| Q |
283 |
taaatt |
288 |
Q |
| |
|
|||||| |
|
|
| T |
43316247 |
taaatt |
43316252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University