View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_36 (Length: 286)
Name: NF20362_low_36
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 29552318 - 29552572
Alignment:
| Q |
16 |
attacaggacaggtgctatagatctggaaaatagaatactgaaccagaaggatttggcaggcaacactattttgcacatttcagcttcaacaagtgatca |
115 |
Q |
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| T |
29552318 |
attacaggataggtgctatagatatggaaaataaaatactgaaccagaaggatgtggcaggcaacactattttgcacatttcagcttcaacaagtgatca |
29552417 |
T |
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| Q |
116 |
acatgaggtaatcattcttctgagtattttagtagctaacatgaatgatctctaacaattgtattgttcattgattattaatcggtatgacaggcagttc |
215 |
Q |
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| T |
29552418 |
acatgaggtaatcattcttcttagtattttagcagctaacatgaatgatctctaacaattgcattgttcattgattattaatcggtatgacaggcagttc |
29552517 |
T |
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| Q |
216 |
gattgttggtaaatactaaaataaatttgaagacaaagaactttgaggacaaaac |
270 |
Q |
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| T |
29552518 |
gattgttggtaaatactaaaataaatttgaagacaaagaactttgaggacaaaac |
29552572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 6611236 - 6611183
Alignment:
| Q |
205 |
acaggcagttcgattgttggtaaatactaaaataaatttgaagacaaagaactt |
258 |
Q |
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| T |
6611236 |
acaggcagttcgattgttggtaaagactaaaataaatttgaacacaatgaactt |
6611183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 17293066 - 17292939
Alignment:
| Q |
140 |
tattttagtagctaacatgaatgatctctaacaattgtattgttcattgattattaatcggtatgacaggcagttcgattgttggtaaatactaaaataa |
239 |
Q |
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| T |
17293066 |
tattttagttgctaatatgaatgatctttaacaattgtatcgttcatgaattacta---tgtagcacaggcgcttcgattgttggtaagtactgggataa |
17292970 |
T |
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| Q |
240 |
atttgaagacaaagaactttgaggacaaaac |
270 |
Q |
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| T |
17292969 |
atttgaaggcgaagaatttggagaacaaaac |
17292939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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