View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_41 (Length: 249)
Name: NF20362_low_41
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3828544 - 3828308
Alignment:
| Q |
1 |
ccaggttcatttgcctgacaaaaccaaannnnnnncttttatcaaacttaacatccctttatccctagaaattagaggacttactagaccataaaatata |
100 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828544 |
ccaggttcatttacctgacaaaaccaaatttttttcttttatcaaacttaacatccctttatccctagaaattagaggacttactagaccataaaatata |
3828445 |
T |
|
| Q |
101 |
aatgtccaaacatcttcgtagcgtatatgtatttgtatatatatgcttagtaaaatcagaaagtcatgcattgatacacacactaaaatgcattaggcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828444 |
aatgtccaaacatcttcgtagcgtatatgtatttgtatatatatgcttagtaaaatcagaaagtcatgcattgatacacacactaaaatgcattaggcta |
3828345 |
T |
|
| Q |
201 |
atagtcttgcataaacttcttcaatctctcagatatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3828344 |
atagtcttgcataaacttcttcaatctctcagatatt |
3828308 |
T |
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