View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20362_low_42 (Length: 246)

Name: NF20362_low_42
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20362_low_42
NF20362_low_42
[»] chr2 (3 HSPs)
chr2 (1-237)||(13441013-13441249)
chr2 (1-210)||(13462224-13462433)
chr2 (1-237)||(13449176-13449412)
[»] chr7 (1 HSPs)
chr7 (1-237)||(3416666-3416902)
[»] chr5 (2 HSPs)
chr5 (71-234)||(12541501-12541664)
chr5 (71-231)||(28386156-28386316)
[»] chr8 (1 HSPs)
chr8 (1-139)||(12640617-12640755)
[»] chr4 (3 HSPs)
chr4 (81-136)||(48959055-48959110)
chr4 (170-235)||(48963097-48963162)
chr4 (173-234)||(48966145-48966206)
[»] chr6 (1 HSPs)
chr6 (71-142)||(12482661-12482732)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13441249 - 13441013
Alignment:
Q  1 caccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgattccacaccgtcgactttccctcccaacaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13441249 caccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgcttccacaccgtcgactttccctcccaacaagtc 13441150  T
Q  101 gacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13441149 gacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgagg 13441050  T
Q  201 atttcatggagaaagatccaccagattgtatcatctc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  13441049 atttcatggagaaagatccaccagattgtatcatctc 13441013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13462433 - 13462224
Alignment:
Q  1 caccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgattccacaccgtcgactttccctcccaacaagtc 100  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||| ||| ||| | |||| || || |||||| |||| || ||||||||||||||     
T  13462433 caccactccctccaacgtccaatcccttaccaaatctctctcatccgccgctccctccctccttcgctttcacaccatcgaattcccctcccaacaagtt 13462334  T
Q  101 gacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgagg 200  Q
    | ||| ||||| |||||||||||||||||||||||||| ||||| |  || |||||||||||||| | |||||||||||||||||||||| |||||||||    
T  13462333 ggccttcctgatggcattgaatctatgtcttccaccaccgactccaccacatcttggaagatccatcatggcgcaatgctcctccatggacccattgagg 13462234  T
Q  201 atttcatgga 210  Q
    ||||||||||    
T  13462233 atttcatgga 13462224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13449412 - 13449176
Alignment:
Q  1 caccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttc-ttcctccgattccacaccgtcgactttccctcccaacaagt 99  Q
    |||||||||| |||||||  ||||||| |||||||||||||||||||  ||| ||||| ||||| ||  | |||||||| ||||| ||||||||||||||    
T  13449412 caccactcccgccaacgcaaaatcccttaccaaatctctctcatccgacgct-ccttcattccttcgtcttcacaccgttgacttcccctcccaacaagt 13449314  T
Q  100 cgacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgag 199  Q
    || |||||||||||| ||||||||||||||||| || || ||| | |  ||| |||||||||||||   |||||| ||||||||  | | | | |||| |    
T  13449313 cggcctccctgaaggtattgaatctatgtcttcaactacggaccccaccaccacttggaagatccatactggcgcgatgctccttaaagaacctattggg 13449214  T
Q  200 gatttcatggagaaagatccaccagattgtatcatctc 237  Q
    |||||||| ||||| |||||||| ||||||||||||||    
T  13449213 gatttcattgagaatgatccaccggattgtatcatctc 13449176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3416666 - 3416902
Alignment:
Q  1 caccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgattccacaccgtcgactttccctcccaacaagtc 100  Q
    ||||||||||||||| ||  |||  || || |||||||| || |  || ||| |||||||||||||  | |||||||||||||||||||  |||||| |     
T  3416666 caccactccctccaatgccaaatttcttacaaaatctctttcttatgccgctcccttcttcctccgccttcacaccgtcgactttccctttcaacaaatg 3416765  T
Q  101 gacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgagg 200  Q
    |||||||||||||||||||||||||| || |||||||| |||    | ||| ||||||||||| ||  ||||||||||||||||||| || |||||||||    
T  3416766 gacctccctgaaggcattgaatctatatcctccaccaccgacctcgtcaccacttggaagatcaacaatggcgcaatgctcctccatcgacccattgagg 3416865  T
Q  201 atttcatggagaaagatccaccagattgtatcatctc 237  Q
    |||||||  | || |||||||||||||||||||||||    
T  3416866 atttcattaaaaacgatccaccagattgtatcatctc 3416902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 12541664 - 12541501
Alignment:
Q  71 cacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtg 170  Q
    ||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| | || ||||||||||| || |||  ||    
T  12541664 cacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccaccactgaccccattacctcttggaaaattcacaatg 12541565  T
Q  171 gcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcat 234  Q
    | |||||||||||||||||| ||||||| |||||  | | |||  ||||||| |||||||||||    
T  12541564 gtgcaatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatcat 12541501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 28386316 - 28386156
Alignment:
Q  71 cacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaagatccaccgtg 170  Q
    |||||||| || || ||||  |||||||||||||||||| ||||| |||| |||||| | |||||||||||| |||| ||| |||||||||||||   ||    
T  28386316 cacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataatg 28386217  T
Q  171 gcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtat 231  Q
    |||||||||||||| ||| | |  ||| ||||||| | |||||  ||||||| ||||||||    
T  28386216 gcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtat 28386156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 12640617 - 12640755
Alignment:
Q  1 caccactccctccaacgctcaatccctaaccaaatctctctcatccgcggcttccttcttcctccgattccacaccgtcgactttccctcccaacaagtc 100  Q
    |||||||||||||||||| || | | | |||||||||||||| | ||  | | | || ||||||||  | |||||||||||||| |||||||||||||||    
T  12640617 caccactccctccaacgcccatttctttaccaaatctctctccttcgtcgatccgtttttcctccgccttcacaccgtcgacttcccctcccaacaagtc 12640716  T
Q  101 gacctccctgaaggcattgaatctatgtcttccaccact 139  Q
    || || || || ||| |||||||  |||| |||||||||    
T  12640717 gatcttcccgacggcgttgaatcattgtcctccaccact 12640755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 48959110 - 48959055
Alignment:
Q  81 actttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccacc 136  Q
    ||||||||||||||||||| | ||||||||| ||| ||||||||||||| ||||||    
T  48959110 actttccctcccaacaagttggcctccctgacggcgttgaatctatgtcctccacc 48959055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 48963162 - 48963097
Alignment:
Q  170 ggcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatc 235  Q
    ||||||||||||||||| ||| | ||| |||||||||||||||| |||||||| || || ||||||    
T  48963162 ggcgcaatgctcctccacggaccaattcaggatttcatggagaaggatccacctgactgcatcatc 48963097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 48966206 - 48966145
Alignment:
Q  173 gcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcat 234  Q
    |||||||||||||| | | | ||| || |||||||||||||||||||||| || ||||||||    
T  48966206 gcaatgctcctccaagaaccaattcagaatttcatggagaaagatccacctgactgtatcat 48966145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 12482661 - 12482732
Alignment:
Q  71 cacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactgac 142  Q
    ||||||||||||||||||| |||| |||||| |||| || | ||||| |||||| |||| |||||| |||||    
T  12482661 cacaccgtcgactttcccttccaagaagtcggcctcgctaacggcatagaatctttgtcctccaccgctgac 12482732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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