View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_43 (Length: 240)
Name: NF20362_low_43
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_43 |
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| [»] scaffold0470 (1 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 6850083 - 6849873
Alignment:
| Q |
15 |
gatgacccaaaacaggaaatgatataccatgtcttccagacgaagacaacggcgatgacctaaaactaggtcctggagaagctgttttggctattatata |
114 |
Q |
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| T |
6850083 |
gatgacccaaaacaggaaatgatataccatgtcttccagatgaagacaacgga-atgacccaaaactatgtcctggagaagctgttttggctattatata |
6849985 |
T |
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| Q |
115 |
ccctaatgattatcataggttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcat |
214 |
Q |
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| T |
6849984 |
ccctaatgattatcataggttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcat |
6849885 |
T |
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| Q |
215 |
aggttacctatg |
226 |
Q |
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| T |
6849884 |
aggttacctatg |
6849873 |
T |
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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 6841194 - 6841264
Alignment:
| Q |
133 |
gttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattc |
203 |
Q |
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| T |
6841194 |
gttccttatttccaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattc |
6841264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 6621660 - 6621747
Alignment:
| Q |
132 |
ggttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggtt |
219 |
Q |
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| T |
6621660 |
ggttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtt |
6621747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 6595847 - 6595933
Alignment:
| Q |
133 |
gttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggtt |
219 |
Q |
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| T |
6595847 |
gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtt |
6595933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 6811718 - 6811771
Alignment:
| Q |
133 |
gttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctctt |
186 |
Q |
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| T |
6811718 |
gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
6811771 |
T |
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Target: scaffold0470 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 11078 - 11165
Alignment:
| Q |
132 |
ggttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggtt |
219 |
Q |
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| T |
11078 |
ggttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtt |
11165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 563 - 477
Alignment:
| Q |
133 |
gttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggtt |
219 |
Q |
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| T |
563 |
gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtt |
477 |
T |
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