View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_44 (Length: 238)
Name: NF20362_low_44
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 7166988 - 7166768
Alignment:
| Q |
18 |
cctcgcagctctcttcaacagctgcggcctctctccgtctcccttctttccagaggcttttcactagcaactctttggtggcagaatcaggcatggaacc |
117 |
Q |
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| T |
7166988 |
cctcgcagctctcttcaacagctgcggcctctctccgtctcccttctttccagaggcttttcactagcaactctttggtggcagaatcaggcatggaacc |
7166889 |
T |
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| Q |
118 |
ggaattcttcatatcttcaaatagtctccaagccagtgcagctcttgttgacttacaataaccttctatcaggaccttatacagatacgcgtctggctcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7166888 |
ggaattcttcatatcttcaaatagtctccaagccagtgcagctcttgttgacttacaataaccttctatcaggaccttatacagatacgcgtctggctcg |
7166789 |
T |
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| Q |
218 |
aaaccgctctgtctgaccatt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
7166788 |
aaaccgctctgtctgaccatt |
7166768 |
T |
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