View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20362_low_49 (Length: 205)

Name: NF20362_low_49
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20362_low_49
NF20362_low_49
[»] chr3 (13 HSPs)
chr3 (14-186)||(23467905-23468078)
chr3 (14-186)||(23401190-23401362)
chr3 (14-179)||(23350981-23351146)
chr3 (14-183)||(23453056-23453225)
chr3 (14-182)||(23382543-23382711)
chr3 (14-170)||(23471428-23471584)
chr3 (14-186)||(23462302-23462474)
chr3 (14-186)||(23477577-23477749)
chr3 (14-182)||(23438880-23439048)
chr3 (14-182)||(23403687-23403855)
chr3 (14-186)||(23498026-23498198)
chr3 (14-186)||(23446277-23446449)
chr3 (94-173)||(36001511-36001590)
[»] scaffold0201 (1 HSPs)
scaffold0201 (16-186)||(10447-10617)
[»] chr4 (1 HSPs)
chr4 (37-173)||(12897866-12898002)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23468078 - 23467905
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23468078 gcacagaaatcgatgcattaagtctgtggtccatcctcgatggtatatagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 23467979  T
Q  114 cgacaatatccaaaaccattcaatgct-ggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23467978 cgacaatatccaaaaccattcaatgttgggaatggcttgatttagatgattgcaggaaaattgtgtctctaaca 23467905  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23401362 - 23401190
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| || ||||||  |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||    
T  23401362 gcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtctttaaaaggactaaaattgaaagagtgttgcaacttataagttctccc 23401263  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
     ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  23401262 tgacaacatccaaaaccattcaatgctagaatgacttgatttagatgattgcaggaaacttgtgtctctaaca 23401190  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 23351146 - 23350981
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||   ||||||    
T  23351146 gcacagaaatcaatgcactaagtctgtggtccatccttgatggcatacagtctttaaaacgactaaaattgaaagagtgttgcaacttagaatgtctccc 23351047  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtc 179  Q
     || ||||||| |||||||||||||||  || |||||||||||||||||||||||||||| |||||    
T  23351046 tgagaatatccgaaaccattcaatgctaaaacggcttgatttagatgattgcaggaaactagtgtc 23350981  T

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Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 23453225 - 23453056
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||| |||||| ||||| |||||||||||   ||||||    
T  23453225 gcacagaaatcaatgcattaagtctttggtccatccttgatggcatacaatctttaaaacagctaatattgaatgagtgctgcaacttagaaagtctccc 23453126  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctcta 183  Q
    ||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  23453125 cgagaatatccaaaaccattcaatcctaaaatggcttgatttagatgattgcaggaaacttgtgtctcta 23453056  T

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Target: chr3; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 23382711 - 23382543
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||   ||||||    
T  23382711 gcacagaaatcaatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaatgagtgtgtcaacttagaatgtctccc 23382612  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctct 182  Q
     || || || | ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23382611 agagaacatgcgaaaccattcaatgctagaatggcttgaattggatgattgcaggaaacttgtgtctct 23382543  T

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Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 23471584 - 23471428
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||  ||||||||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||   ||||||    
T  23471584 gcacagaaattaatgcattaagtttgtggtccatccttgatggcatacaatctttaaaacagctaaaattgaaagagtgttgcaacttagaaagtctccc 23471485  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaa 170  Q
     || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  23471484 agagaatatccaaaaccattcaatgctagaatggcttgaattagatgattgcaggaa 23471428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23462474 - 23462302
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||   ||||||    
T  23462474 gcacagaaatcaatgcaataagtctgtcgtccatccttgatggcatacaatctttaaaacggctaaaattgaatgagtgttgcaacttagaatgtctccc 23462375  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
      | || || ||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  23462374 taagaacatacaaaaccattcaatgctagaatggcttgaattagacaattgcaggaaacttgtgtctctaaca 23462302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23477749 - 23477577
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||  |||||||||||||||| ||   ||||||    
T  23477749 gcacagaaatgaatgcattaagtctgtggtccatccttgatggcatacaatctttaaaagggctaacattacaagagtgttgcaacttggaatgtctccc 23477650  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
     || ||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||    
T  23477649 tgagaatatccgaaaccattcaatgctaaaatggcttgatttagatggttgcaggaaacttgtgtctctaaca 23477577  T

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Target: chr3; HSP #9
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 23439048 - 23438880
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||   ||||||    
T  23439048 gcacagaaatcaatgcattaagtctatggtccatacttgatggtatacgatctttaaaacggctaaaattgaatgagtgttgcaacttagaatgtctccc 23438949  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctct 182  Q
     || || || |||||||||  |||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  23438948 tgagaacatacaaaaccatataatgctagaatggcttgaattagacgattgcaggaaacttgtgtctct 23438880  T

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Target: chr3; HSP #10
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 23403855 - 23403687
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||   ||||||    
T  23403855 gcacagaaatcaatgcatcaagtctgtggtccatacttgatggtatacagtctttaaaacggctaaaattgaatgagtgtgtcaacttagagtgtctccc 23403756  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctct 182  Q
     || || ||   ||| |||||| |||| ||||||||||| || ||||||||||||||||||||||||||    
T  23403755 agagaacatgggaaagcattcattgcttgaatggcttgaattggatgattgcaggaaacttgtgtctct 23403687  T

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Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23498198 - 23498026
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||   |||| |||| ||||||||||| ||   | ||||    
T  23498198 gcacagaaatcaatgcattaagtctgtggtccatccttgatggcatacaatctttgaaacggctctcattgcaagattgttgcaacttggaatgtgtccc 23498099  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
     || || || | |||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||    
T  23498098 tgagaacatacgaaaccattcaatgctaaaatggctagttttagatgattgcaggaaacttgtgtctctaaca 23498026  T

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Target: chr3; HSP #12
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 23446449 - 23446277
Alignment:
Q  14 gcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccc 113  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||   |||| | |||||||||||| | ||   ||||||    
T  23446449 gcacagaaatcaatgcattaagtctgtggtctatccttgatggcatacagtctttaaaatggctctcattgcatgagtgttgcaacatggaatgtctccc 23446350  T
Q  114 cgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
    ||| || || |||||||||||||||||  || | || | |||||||||||||||||||||||||||| |||||    
T  23446349 cgagaacatacaaaaccattcaatgctaaaaagtctagctttagatgattgcaggaaacttgtgtctgtaaca 23446277  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 36001590 - 36001511
Alignment:
Q  94 tgcaacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaact 173  Q
    |||||||||||   |||||| ||||| |||||||||  ||||||| |||||||||||  ||||||||| ||| |||||||    
T  36001590 tgcaacttagaaagtctccctgacaacatccaaaacatttcaatgttggaatggctttgtttagatgaatgccggaaact 36001511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 10617 - 10447
Alignment:
Q  16 acagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccccg 115  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||   |||||||||||||||   |||||| |    
T  10617 acagaaatcaatgcattaagtctgtggtccatccttgatggcatacattctttaaaacggctaacattgaataggtgttgcaacttagaatgtctccctg 10518  T
Q  116 acaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaaca 186  Q
      || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  10517 tgaacatacaaaaccattcaatgcttgaatggcttgaattagatgattgcaggaaacttgtgtctgtaaca 10447  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 12897866 - 12898002
Alignment:
Q  37 ctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccccgacaatatccaaaaccattcaa 136  Q
    ||||||| ||||||||| || ||||| |||||||||||  |||| |||| | | || |||||||||||   ||||||| |||| ||||||| | ||||||    
T  12897866 ctgtggttcatccttgacggcatacaatctttaaaacgattaaatttgagaaaatgctgcaacttagaaactctccccaacaacatccaaagcaattcaa 12897965  T
Q  137 tgctggaatggcttgatttagatgattgcaggaaact 173  Q
    || || || ||||| |||||||||| |||||||||||    
T  12897966 tgttgcaaaggcttaatttagatgaatgcaggaaact 12898002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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