View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_5 (Length: 552)
Name: NF20362_low_5
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 188 - 432
Target Start/End: Original strand, 30738889 - 30739134
Alignment:
| Q |
188 |
ggttaggctccttttcattttatctcaattgtatgcttaaacatcgaagacgaaccaaaaatttggtta-ctgcatggcagatcaaattccaagttcaag |
286 |
Q |
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| T |
30738889 |
ggttagactccttttccttttatctcaattgtatgcttggacaacgaagatgaaactaaaatttggttaacaacattgcagatcagattccaagttctaa |
30738988 |
T |
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| Q |
287 |
gtgtgagttacccatcaattccagttgagcaagaaaaagaatcaaagccatttgccccaatggtggttaatgtaagtatttcttgttctccaattttggt |
386 |
Q |
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| T |
30738989 |
gtgtgagttacccaacgattccagttgagcaagcaaaagaatcaaagccatttgccccaatggtggtcaatgtaagtatatcttgttccccatttttgtc |
30739088 |
T |
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| Q |
387 |
atctactttcttcattaacttgattcatgcatttctgtggttattt |
432 |
Q |
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| T |
30739089 |
atctactttcttcattacattgattcatgcatttctgtgattattt |
30739134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 34519369 - 34519447
Alignment:
| Q |
464 |
tcacggatgatcaaaaccaaaaccatgatatcaatatcacattattttcgcttttcacattgtttccccttctcctatg |
542 |
Q |
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| T |
34519369 |
tcacggatgatcaaaaccaaaaccatgatatcaatatcacattattttcgcttttcacattgtttccccttctcctatg |
34519447 |
T |
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