View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_low_7 (Length: 523)
Name: NF20362_low_7
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 53226182 - 53225792
Alignment:
| Q |
17 |
aggttgaacaagtgggtcggagacacaatcatggagatgggtccactttgccaacgaaggtgacgacattatgctgatgtgggtgaaacggtgaacatta |
116 |
Q |
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| T |
53226182 |
aggttgaacaagtgggtcggagacacaatc-tggagatgggtccactttgccaacgaaggtgacgacattatgctgatgtgggtgaaacggtgaacatta |
53226084 |
T |
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| Q |
117 |
ttctagtttttaagtatccgtggttattcgtaccgttaattaaaatttgaaattcaaattgttggggcttcttatagaatgacatgtggcaacataacat |
216 |
Q |
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| T |
53226083 |
ttctagtttttaagtatccgtggttattcgtaccgttaattaaaatttgaaattcaaattgttggggcttcttatagaatgacacgtggcaacataacat |
53225984 |
T |
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| Q |
217 |
gaaatctctctaagaatgtaatttgtttttggattttttctagtaacacccctcgagtatccaccctaaaataactnnnnnnncccttgttgtgaaatta |
316 |
Q |
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| T |
53225983 |
gaaatctctctaagaatgtaatttgtttttggattttttctagtaacacccctcgagtatccaccctaaaataact-aaaaaacccttgttgtgaaatta |
53225885 |
T |
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| Q |
317 |
aatttacaaaatcaaaccattgatcca-nnnnnnnncctcttcacttgcccctcgttgctttgcttcattttcgaatctatatcaacattata |
408 |
Q |
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| T |
53225884 |
aatttacaaaatcaaaccattgatccattttcttttcctcttcacttgcccctcgttgctttgcttcattttcgaatctatatcaacattata |
53225792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 427 - 514
Target Start/End: Complemental strand, 53225675 - 53225588
Alignment:
| Q |
427 |
aaatgttatcagattttacatgtaagaaactccgttaccaaaccctcatttactttgattcttatgttggtcattgtgtgagtataat |
514 |
Q |
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| T |
53225675 |
aaatgttatcacattttacatgtaagaaactccattaccaaagcctcatttattttgattcttatgttggtcattgtgtgagtgtaat |
53225588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 51454893 - 51454932
Alignment:
| Q |
304 |
tgttgtgaaattaaatttacaaaatcaaaccattgatcca |
343 |
Q |
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| T |
51454893 |
tgttgtgaaattaaatttacaaaatcaaaccattgatcca |
51454932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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