View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20363_high_1 (Length: 264)
Name: NF20363_high_1
Description: NF20363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20363_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 9761725 - 9761493
Alignment:
| Q |
25 |
catgtgtcttagatattagatgatgtagaaacatgaaggatagttcacaaagtgacattcgttcattctttgtgttctttccctttcacgcttgtgatta |
124 |
Q |
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| T |
9761725 |
catgtgtcttagatattagatgatgtagaaacatgaaggatagttcacaaagtgacatttgttcattctttgtgttctttccctttcacgcttgtgatta |
9761626 |
T |
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| Q |
125 |
aagcatcaactaaatatggctaataaaagaaaggatcatgcagcaagagtaaaatatttggtggaagtttattaaatgaaaatggattgattgtggcata |
224 |
Q |
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| T |
9761625 |
aagcatcaactaaatatggctaataaaagaaaggatcatgcagcaagagtaaaatatttggtggaagtttattaaatgaaaatggattgattgtggcata |
9761526 |
T |
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| Q |
225 |
tcacacaatgctgaattttcactatctctgctc |
257 |
Q |
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| T |
9761525 |
tcacacaatgctgaattttcactatctctgctc |
9761493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 35656622 - 35656468
Alignment:
| Q |
90 |
ttctttgtgttctttccctttcacgcttgtgattaaagcatcaactaaatatggctaataaaagaaaggatcatgcagcaagagtaaaatatttggtgga |
189 |
Q |
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| T |
35656622 |
ttctttgtattctttctcagtcacgcctgtggt-aaagcatagactaaatgtggttaaaaaaaggaaggatcatgcagcgagagtaaattattt--tggt |
35656526 |
T |
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| Q |
190 |
agtttattaaatgaaaatggattgattgtggcatatcacacaatgctgaattttcact |
247 |
Q |
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| T |
35656525 |
aatttattaaatgaaaatgccttgatggagacataccatagaatgctgaattttcact |
35656468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 39447310 - 39447366
Alignment:
| Q |
25 |
catgtgtcttagatattagatgatgtagaaacatgaaggatagttcacaaagtgaca |
81 |
Q |
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| T |
39447310 |
catgtgtcttagatattacatgatacagaaacatgaaggatagttcacaaattgaca |
39447366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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