View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20363_high_12 (Length: 327)
Name: NF20363_high_12
Description: NF20363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20363_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 3800684 - 3800983
Alignment:
| Q |
6 |
cataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtca |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3800684 |
cataccctaatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtca |
3800783 |
T |
|
| Q |
106 |
ttgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3800784 |
ttgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgt |
3800883 |
T |
|
| Q |
206 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaaggaggtggatcaagtagttggtgatgatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3800884 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatg |
3800983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 305
Target Start/End: Complemental strand, 3789423 - 3789124
Alignment:
| Q |
6 |
cataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtca |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
3789423 |
cataccctaatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtca |
3789324 |
T |
|
| Q |
106 |
ttgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgt |
205 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
3789323 |
ctgtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgt |
3789224 |
T |
|
| Q |
206 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaaggaggtggatcaagtagttggtgatgatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3789223 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatg |
3789124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 3780368 - 3780122
Alignment:
| Q |
3 |
atgcataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgag |
102 |
Q |
| |
|
||||||||||| |||| || | ||||| |||||| || |||||||| ||||| || |||| || |||||||| || || || |||||||| || || || |
|
|
| T |
3780368 |
atgcataccctgatgaatttcttggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattag |
3780269 |
T |
|
| Q |
103 |
tcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatt |
202 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||| | |||||||||| | || || || ||| || |
|
|
| T |
3780268 |
tcattgcggatggaattctaccgtagaaggtgtatatagcggtgtacctttcttgtgttggccgtttcacggtgatcaatttatgaacaagtcatatgtt |
3780169 |
T |
|
| Q |
203 |
tgtgatgtgtggaagactggacttgaattagagaaagatgatgatgg |
249 |
Q |
| |
|
||||||||||||||| |||||||||| |||| || ||||| ||||| |
|
|
| T |
3780168 |
tgtgatgtgtggaaggttggacttgaactagacaaggatgaagatgg |
3780122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 3768090 - 3767850
Alignment:
| Q |
3 |
atgcataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgag |
102 |
Q |
| |
|
||||||||||| |||| |||| |||| |||||| || || ||| |||||| ||| || | || |||||||| ||||| || || ||||| || || || |
|
|
| T |
3768090 |
atgcataccctgatgaattcctcggaactaaaggaaagatcgttagttgggtaccgcagaagaagatattgaaccatcctgctatagcttgtttcattag |
3767991 |
T |
|
| Q |
103 |
tcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatt |
202 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| || ||||| |||||||||| |||||||||||| || |||||||||| || || || |||||| |
|
|
| T |
3767990 |
tcattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccatttgcaactgatcaatttacgaacaagtcatatatt |
3767891 |
T |
|
| Q |
203 |
tgtgatgtgtggaagactggacttgaattagagaaagatga |
243 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||| |
|
|
| T |
3767890 |
tgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University