View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20363_high_17 (Length: 313)
Name: NF20363_high_17
Description: NF20363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20363_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 40872222 - 40871922
Alignment:
| Q |
1 |
tctcttaggatcatgacaataatcatagaccaagtaattattttggacccattgcattgcaacattttgctgacggctcagcttgccgccatagccgggt |
100 |
Q |
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| T |
40872222 |
tctcttaggatcatgacaataatcatagaccaagtaatttttttggacccattgcattgcaacattttgctgacggctcagcttgccgccatagccgggt |
40872123 |
T |
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| Q |
101 |
ggtgagacagaaggcggccggcatgaggaggtggaatcagtggtacaaccttgtagtttgaagttttggtatcttccaatgaagggttggtaagtataat |
200 |
Q |
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| T |
40872122 |
ggtgagacagaaggtggccggcatgaggaggtggaatcagtggtacaaccttgtagtttgaagttttggtatcttccaatgaagggttggtaagtataat |
40872023 |
T |
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| Q |
201 |
ttgctttgtattttccattctctgtagcccatgcagatgcatcccagattgatccatacacatacattggtcttgaagggaatgttgcatcactcttcct |
300 |
Q |
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| T |
40872022 |
ttgctttgtattttccattctctgtagcccatgcagatgcatcccagattgatccatacacatacattggtcttgaagggaatgttgcatcactcttcct |
40871923 |
T |
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| Q |
301 |
a |
301 |
Q |
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| T |
40871922 |
a |
40871922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 301
Target Start/End: Original strand, 21083717 - 21083877
Alignment:
| Q |
141 |
tggtacaaccttgtagtttgaagttttggtatcttccaatgaagggttggtaagtataatttgctttgtattttccattctctgtagcccatgcagatgc |
240 |
Q |
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| T |
21083717 |
tggtacaaccttgtaatttgaagttagtgtaccttccaacaaagggttggtatttataatcagctttatattttccatcttctgttgcccaagaagatgc |
21083816 |
T |
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| Q |
241 |
atcccagattgatccatacacatacattggtcttgaagggaatgttgcatcactcttccta |
301 |
Q |
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|||||| ||||||||||| | |||||||||||||| |||| | || |||||||| |||||| |
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| T |
21083817 |
atcccaaattgatccatagagatacattggtcttgtagggtaggtggcatcacttttccta |
21083877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 27684162 - 27684259
Alignment:
| Q |
203 |
gctttgtattttccattctctgtagcccatgcagatgcatcccagattgatccatacacatacattggtcttgaagggaatgttgcatcactcttcct |
300 |
Q |
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|||||||||||||||| ||||| ||||||| || |||||||| || || ||||| || ||||||||||| || |||||||||||||||||||| |
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| T |
27684162 |
gctttgtattttccatcttctgttgcccatgatgaagcatcccaaatagacccataaacccacattggtcttagtggaaatgttgcatcactcttcct |
27684259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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