View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20363_high_18 (Length: 313)

Name: NF20363_high_18
Description: NF20363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20363_high_18
NF20363_high_18
[»] chr5 (4 HSPs)
chr5 (25-284)||(13473185-13473444)
chr5 (109-158)||(24300871-24300920)
chr5 (109-158)||(24372395-24372444)
chr5 (120-168)||(6291670-6291718)
[»] chr8 (1 HSPs)
chr8 (79-242)||(16952479-16952646)
[»] chr1 (2 HSPs)
chr1 (111-163)||(44382624-44382676)
chr1 (109-159)||(3584330-3584380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (109-178)||(11569-11638)
[»] chr3 (2 HSPs)
chr3 (111-174)||(51046809-51046872)
chr3 (107-159)||(24409258-24409310)
[»] chr6 (1 HSPs)
chr6 (105-175)||(7779871-7779941)
[»] chr7 (1 HSPs)
chr7 (122-178)||(1555236-1555292)
[»] chr2 (1 HSPs)
chr2 (119-175)||(14825032-14825088)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 13473444 - 13473185
Alignment:
Q  25 catcatcaaggactaatacttaaaaattgtttaaaactcaaacgacatatgttatttcttagtgttagttgttgacgactctcttcatttttatgattga 124  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  13473444 catcatcgaggactgttacttaaaaattgtttaaaattcaaacgacgtatgttattttttagtgatagttgttgacaactctcttcatttttatgattga 13473345  T
Q  125 aataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatatatcttatatccgaaatcaatacattcaccatgttagttgtaaatatg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13473344 aataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatatatcttatatccgaaatcaatacattcaccatgttagttgtaaatatg 13473245  T
Q  225 agaagggtcatgtgtttttgtttttaaattatatcgttgatactcgtcaattttaagtat 284  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||||||    
T  13473244 agaagggtcgtgtgtttttgtttataaataatatcgttgatactcattaattttaagtat 13473185  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 24300871 - 24300920
Alignment:
Q  109 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaa 158  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||||    
T  24300871 tcatttttatgattgaaatattgacttaattaaatccggtttgattaaaa 24300920  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 24372444 - 24372395
Alignment:
Q  109 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaa 158  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||||    
T  24372444 tcatttttatgattgaaatattgacttaattaaatccggtttgattaaaa 24372395  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 6291718 - 6291670
Alignment:
Q  120 attgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaa 168  Q
    |||||||||||||||||||||| |||  |||||||||||| ||| ||||    
T  6291718 attgaaataatgatttaattgatatcattttgattaaaacaacataaaa 6291670  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 16952479 - 16952646
Alignment:
Q  79 tttcttagtgttagttgttgacgactctcttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata 178  Q
    |||||||||| ||| |||| | ||  ||| ||||||||| |||||||||| ||| |||||||||| ||||||||||||||| || |||||||||||| ||    
T  16952479 tttcttagtgatagatgttaatgatcctcctcatttttaagattgaaatagtgacttaattgaaaccggtttgattaaaacaacggaaaataaatatgta 16952578  T
Q  179 tcttatat----ccgaaatcaatacattcaccatgttagttgtaaatatgagaagggtcatgtgtttt 242  Q
     ||  |||    |||| ||||||  | ||||||| ||||  |||||||||| |||| |||||||||||    
T  16952579 gctcctattgaaccgatatcaatcaagtcaccatcttagccgtaaatatgaaaaggatcatgtgtttt 16952646  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 44382676 - 44382624
Alignment:
Q  111 atttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgaca 163  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| | |||||||    
T  44382676 atttttatgattgaaataatgatttaattgatatcagtttgatcataacgaca 44382624  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 3584380 - 3584330
Alignment:
Q  109 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaac 159  Q
    ||||||||| ||||||||||||||||||||||| | | |||||||||||||    
T  3584380 tcatttttaagattgaaataatgatttaattgataccagtttgattaaaac 3584330  T

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Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 11638 - 11569
Alignment:
Q  109 tcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata 178  Q
    |||||||||||||||||||||| ||||| |||| || | || ||||||||| |  |||||||||||||||    
T  11638 tcatttttatgattgaaataataatttatttgatatagattggattaaaacaatggaaaataaatatata 11569  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 51046872 - 51046809
Alignment:
Q  111 atttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaata 174  Q
    ||||||| ||||||||||||||||||||||  |||  |||||||||||| ||| ||| ||||||    
T  51046872 atttttacgattgaaataatgatttaattgttatcaatttgattaaaacaacaaaaactaaata 51046809  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 24409258 - 24409310
Alignment:
Q  107 cttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaac 159  Q
    ||||| ||||| |||| |||||||||||||||||| ||  |||||||||||||    
T  24409258 cttcaattttaagattcaaataatgatttaattgatattagtttgattaaaac 24409310  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 7779941 - 7779871
Alignment:
Q  105 ctcttcatttttatgattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatat 175  Q
    ||||| ||||||| |||||||||||||| |||| ||| |||  |||||||||||| |  ||||||||||||    
T  7779941 ctctttatttttacgattgaaataatgacttaactgatatcaatttgattaaaactatggaaaataaatat 7779871  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 1555292 - 1555236
Alignment:
Q  122 tgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatatata 178  Q
    ||||||||| | |||| ||| ||||||||||||||||| | | ||||||||||||||    
T  1555292 tgaaataataaattaaatgacatcggtttgattaaaacaagaaaaaataaatatata 1555236  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 14825032 - 14825088
Alignment:
Q  119 gattgaaataatgatttaattgaaatcggtttgattaaaacgacagaaaataaatat 175  Q
    |||||||||||| |||| ||||| ||| ||||||||||| | ||| |||||||||||    
T  14825032 gattgaaataattatttgattgatatcagtttgattaaaccaacataaaataaatat 14825088  T

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