View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20363_high_3 (Length: 355)

Name: NF20363_high_3
Description: NF20363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20363_high_3
NF20363_high_3
[»] chr7 (6 HSPs)
chr7 (6-336)||(29477140-29477470)
chr7 (24-323)||(29480276-29480561)
chr7 (169-277)||(29894545-29894653)
chr7 (172-271)||(29446494-29446593)
chr7 (150-271)||(29922894-29923015)
chr7 (205-268)||(19638002-19638065)
[»] scaffold0242 (2 HSPs)
scaffold0242 (67-320)||(14504-14760)
scaffold0242 (67-320)||(23339-23595)
[»] chr1 (3 HSPs)
chr1 (133-268)||(4367357-4367492)
chr1 (169-268)||(4015737-4015836)
chr1 (169-265)||(10218160-10218256)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 29477470 - 29477140
Alignment:
Q  6 gtcgaataatatagcgaggattaggcttccttactgtccaaaccgattcatttgtatatgagacctatttaggtttcatcctcaacgccgccaccccact 105  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29477470 gtcgaataaaatagcgaggattaggcttccttactgtccaaaccgattcatttgtatatgagacctattttggtttcatcctcaacgccgccaccccact 29477371  T
Q  106 gcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatcccatcgcagagttactttccttccttcccgtcaaatctcttgttcgact 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29477370 gcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgact 29477271  T
Q  206 caaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacctcaatcgatcttcaacaagaaattcactcttcacaata 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29477270 caaatgtgttagcaagtcttggaaatccctaatctctgatcccagctttgtgaaattacacctcaatcgatcttcaacaagaaatccactcttcacaata 29477171  T
Q  306 ggcacgctgcacgtcgcagctatccccatcg 336  Q
    |||||||||||| ||||||||||||||||||    
T  29477170 ggcacgctgcacatcgcagctatccccatcg 29477140  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 24 - 323
Target Start/End: Complemental strand, 29480561 - 29480276
Alignment:
Q  24 gattaggcttccttactgtccaaaccgattcatttgtatatgagacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatga 123  Q
    ||||||||||||| ||| |||||||||  ||||||| || |||  |||||| | |||||||||||||||||  ||||||||||||| |  || ||||       
T  29480561 gattaggcttcctcactttccaaaccgtatcatttgcatctga--cctatt-atgtttcatcctcaacgccttcaccccactgcgtgt--acaatca--- 29480470  T
Q  124 ctccggtgacgccggtggtccttcctgacgatcccatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtc 223  Q
          |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||||  | |||||    
T  29480469 ------tgacgccggtggtccttcctgatgatctcatcacagagttactttccttccttcccgtcaaatctcctgttcgattcaagtgtgtctgtaagtc 29480376  T
Q  224 ttggaaatccttaatctctgatcccacctttgtgaaattacacctcaatcgatcttcaacaagaaattcactcttcacaataggcacgctgcacgtcgca 323  Q
    ||||||| || |||| ||  |||||| |||||| |||||||||||||||| ||| |||||| ||||| | ||||||||| ||| ||| |||||| |||||    
T  29480375 ttggaaaaccctaatttccaatcccaactttgtaaaattacacctcaatcaatcctcaacacgaaatcccctcttcacactagtcacactgcacttcgca 29480276  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 29894545 - 29894653
Alignment:
Q  169 tactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacct 268  Q
    |||||||||| ||||| || | ||||||||||||| |||  ||||||||||||||||||||| || |||||| |||||||||||| || |||||||||||    
T  29894545 tactttccttacttccggttatatctcttgttcgattcacttgtgttagcaagtcttggaaaaccctaatctttgatcccaccttcgtcaaattacacct 29894644  T
Q  269 caatcgatc 277  Q
    |||| ||||    
T  29894645 caatagatc 29894653  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 29446593 - 29446494
Alignment:
Q  172 tttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacctcaa 271  Q
    |||||||||||||||||||||||||||||||| |||| ||||| |  |||| ||||||| ||  ||| || |||  |||||| || ||||||||||||||    
T  29446593 tttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacaccttcgtcaaattacacctcaa 29446494  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 29923015 - 29922894
Alignment:
Q  150 gacgatcccatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatccca 249  Q
    ||||||| |||||| ||  |||||||||| ||||| || ||| ||||| ||||| ||||  ||||||| ||||||||||||    | ||||| |||||||    
T  29923015 gacgatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaaatactcatctccgatccca 29922916  T
Q  250 cctttgtgaaattacacctcaa 271  Q
    | || |||||||| ||||||||    
T  29922915 cattcgtgaaattgcacctcaa 29922894  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 19638065 - 19638002
Alignment:
Q  205 tcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacct 268  Q
    ||||||||||  ||||||| |||||| || | |||||||||||||| ||||| |||||||||||    
T  19638065 tcaaatgtgtctgcaagtcatggaaaaccatcatctctgatcccacttttgtcaaattacacct 19638002  T

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Target: scaffold0242 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 67 - 320
Target Start/End: Complemental strand, 14760 - 14504
Alignment:
Q  67 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatcccatcgcaga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  14760 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcaga 14661  T
Q  167 gttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacac 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  14660 gttactttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacac 14561  T
Q  267 ctcaatcg---atcttcaacaagaaattcactcttcacaataggcacgctgcacgtc 320  Q
    ||||||||   ||| |||||| ||||| ||||||||||| ||| ||  |||||||||    
T  14560 ctcaatcgatcatcgtcaacacgaaatccactcttcacactagtcattctgcacgtc 14504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 67 - 320
Target Start/End: Complemental strand, 23595 - 23339
Alignment:
Q  67 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatcccatcgcaga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  23595 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcaga 23496  T
Q  167 gttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacac 266  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  23495 gttactttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacac 23396  T
Q  267 ctcaatcg---atcttcaacaagaaattcactcttcacaataggcacgctgcacgtc 320  Q
    ||||||||   ||| |||||| ||||| ||||||||||| ||| ||  |||||||||    
T  23395 ctcaatcgatcatcgtcaacacgaaatccactcttcacactagtcattctgcacgtc 23339  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 4367492 - 4367357
Alignment:
Q  133 cgccggtggtccttcctgacgatcccatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatc 232  Q
    |||||||||||||  |||| |||| ||| || ||| ||||||| || || ||||| |||| |||| ||||| |||  ||||| || ||||||||||||      
T  4367492 cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaa 4367393  T
Q  233 cttaatctctgatcccacctttgtgaaattacacct 268  Q
    | | |||||||||||| ||||||||||| |||||||    
T  4367392 cctcatctctgatcccgcctttgtgaaactacacct 4367357  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 4015836 - 4015737
Alignment:
Q  169 tactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacct 268  Q
    ||||||| || ||||| || | ||||||||||||| |||  ||||| || |||||||||||| || |||| || ||| |||||||||||||||| |||||    
T  4015836 tactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaatttccgattccacctttgtgaaattgcacct 4015737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 10218160 - 10218256
Alignment:
Q  169 tactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattaca 265  Q
    |||||||||| ||||| || |||||||||||| |  |||  ||||| || || ||||||||| || |||| ||||| ||||| ||||||||||||||    
T  10218160 tactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaaaccctaatttctgaacccacttttgtgaaattaca 10218256  T

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