View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20364_high_1 (Length: 934)

Name: NF20364_high_1
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20364_high_1
NF20364_high_1
[»] chr3 (5 HSPs)
chr3 (18-535)||(33991088-33991605)
chr3 (598-923)||(33990700-33991025)
chr3 (852-882)||(1116401-1116431)
chr3 (849-886)||(4216083-4216120)
chr3 (851-904)||(35335587-35335640)
[»] chr4 (6 HSPs)
chr4 (78-255)||(42867826-42868003)
chr4 (866-908)||(7367535-7367577)
chr4 (600-670)||(42868453-42868523)
chr4 (855-903)||(43843634-43843682)
chr4 (376-414)||(41571464-41571502)
chr4 (455-509)||(42868177-42868231)
[»] chr5 (4 HSPs)
chr5 (78-255)||(18854669-18854846)
chr5 (452-512)||(18854946-18855006)
chr5 (602-670)||(18855231-18855299)
chr5 (848-884)||(6760514-6760550)
[»] chr1 (2 HSPs)
chr1 (848-908)||(3523373-3523433)
chr1 (855-897)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (865-920)||(41775203-41775258)
chr7 (848-886)||(438696-438734)
[»] chr8 (1 HSPs)
chr8 (866-920)||(14227192-14227246)
[»] chr2 (1 HSPs)
chr2 (376-414)||(26004210-26004248)
[»] chr6 (2 HSPs)
chr6 (850-883)||(4323114-4323147)
chr6 (856-893)||(32926315-32926352)


Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 33991605 - 33991088
Alignment:
Q  18 cataagggttgacattactgcttttaattaacttagcaagctaagaaccaaagcagaattgtacctttgcaattacagggcgagctattgcagttccaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991605 cataagggttgacattactgcttttaattaacttagcaagctaagaaccaaagcagaattgtacctttgcaattacagggcgagctattgcagttccaag 33991506  T
Q  118 caaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaacaaattcctccttcaaatccttcacgactaactgagaagct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991505 caaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaacaaattcctccttcaaatccttcacgactaactgagaagct 33991406  T
Q  218 ccgctggcttttgccttctcttctaaaccttccaattcacttgccccctaagaaaatttgcatttgttaatcaagcatgcagcaattaaagtaaatgaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991405 ccgctggcttttgccttctcttctaaaccttccaattcacttgccccctaagaaaatttgcatttgttaatcaagcatgcagcaattaaagtaaatgaca 33991306  T
Q  318 tccgtcaattcagtttctaaagtgtatgaaatcctgtaatttagtctttgacatatgaatcttaatagcagggactaaattgaaggattttatatacatt 417  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33991305 tcagtcaattcagtttctaaagtgtatgaaatcctgcaatttagtctttgacatctgaatcttaatagcagggactaaattgaaggattttatatacatt 33991206  T
Q  418 agagactattgatcatatttatgtacagattagaacatacttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctgaaatataa 517  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33991205 agagactatttatcatatttatgtacagattagaacatacttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctgaaatataa 33991106  T
Q  518 ataaacatcaaatattgt 535  Q
    ||||||||||||||||||    
T  33991105 ataaacatcaaatattgt 33991088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 598 - 923
Target Start/End: Complemental strand, 33991025 - 33990700
Alignment:
Q  598 tttatatacctcagccaggggacaacaaccgatgtgtctaagccaccactataagccagaacaaccttattcagtttaccttttagtccagcaaccttct 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33991025 tttatatacctcagccaggggacaacaaccgatgtgtctaagccaccactataagccagaacaaccttattcaatttaccttttagtccagcaaccttct 33990926  T
Q  698 tggtctcagaaatttcaacgtctttatatagcacagcttttataactgcatttcaataaaacttcactgttagagacattaaacttaaaactcaattatc 797  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990925 tggtctcagaaatttctacgtctttatatagcacagcttttataactgcatttcaataaaacttcactgttagagacattaaacttaaaactcaattatc 33990826  T
Q  798 agataacactgaacatatctggattctggtgtatgacactgaccaatggtttacatttaatcacttcaattttctcaaattattattggcgtctatgtgt 897  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33990825 agataacactgaacatatctggattctggtgtatgacactgacccatggtttacatttaagcacttcaattttctcaaattattattggcgtctatgtgt 33990726  T
Q  898 tagtgtcgtgtccagtgtctgtgctg 923  Q
    |||||||||||||||||| |||||||    
T  33990725 tagtgtcgtgtccagtgtatgtgctg 33990700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 852 - 882
Target Start/End: Complemental strand, 1116431 - 1116401
Alignment:
Q  852 atttaatcacttcaattttctcaaattatta 882  Q
    |||||||||||||||||||||||||||||||    
T  1116431 atttaatcacttcaattttctcaaattatta 1116401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 849 - 886
Target Start/End: Original strand, 4216083 - 4216120
Alignment:
Q  849 tacatttaatcacttcaattttctcaaattattattgg 886  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  4216083 tacatttaatcacttcaattttctttaattattattgg 4216120  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 851 - 904
Target Start/End: Complemental strand, 35335640 - 35335587
Alignment:
Q  851 catttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtc 904  Q
    |||||||||||||  ||||||||||||||||| | | |||||||||| ||||||    
T  35335640 catttaatcactttcattttctcaaattattactagtgtctatgtgtcagtgtc 35335587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 78 - 255
Target Start/End: Original strand, 42867826 - 42868003
Alignment:
Q  78 gtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaac 177  Q
    ||||||||||||||||||| || || ||||  || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||  ||||    
T  42867826 gtacctttgcaattacaggacgggccattgaggtcccaagcaaatacttcctctcataaatggcaccagcacgcaggcaaggaaatacgtaatctttaac 42867925  T
Q  178 aaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattc 255  Q
    ||||||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||  |||| ||||| ||||||||    
T  42867926 aaattcctccttcaagtcctttacgactaattgggaggctccactggcttttgctttggcttccaaaccatccaattc 42868003  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 866 - 908
Target Start/End: Complemental strand, 7367577 - 7367535
Alignment:
Q  866 attttctcaaattattattggcgtctatgtgttagtgtcgtgt 908  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367577 attttctcaaattattattggtgtctatgtgttagtgtcgtgt 7367535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 42868453 - 42868523
Alignment:
Q  600 tatatacctcagccaggggacaacaaccgatgtgtctaagccaccactataagccagaacaaccttattca 670  Q
    ||||||||||| ||| |||||||  || |||||||||||||||||||| ||||| || |||||||||||||    
T  42868453 tatatacctcaaccatgggacaatgactgatgtgtctaagccaccactgtaagcaagtacaaccttattca 42868523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 855 - 903
Target Start/End: Original strand, 43843634 - 43843682
Alignment:
Q  855 taatcacttcaattttctcaaattattattggcgtctatgtgttagtgt 903  Q
    |||||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  43843634 taatcacttttattttctcaaattattattggtgtctacgtgttagtgt 43843682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 41571464 - 41571502
Alignment:
Q  376 atcttaatagcagggactaaattgaaggattttatatac 414  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  41571464 atcttaatagcagggactaagttgacggattttatatac 41571502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 455 - 509
Target Start/End: Original strand, 42868177 - 42868231
Alignment:
Q  455 tacttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctg 509  Q
    ||||||||| | ||||||||||||||| ||||||||||| || || |||||||||    
T  42868177 tacttggccaacatcagcagtgaagcacacaacatcacaaccgtaattctctctg 42868231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 78 - 255
Target Start/End: Original strand, 18854669 - 18854846
Alignment:
Q  78 gtacctttgcaattacagggcgagctattgcagttccaagcaaatacttcctctcataaattgcaccggcacgcaggcaagggaatacataatccctaac 177  Q
    ||||||||||||||||||| || || ||||  || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||  ||||    
T  18854669 gtacctttgcaattacaggacgtgccattgaggtcccaagcaaatacttcctctcataaatagcaccagcacgcaggcaaggaaatacgtaatctttaac 18854768  T
Q  178 aaattcctccttcaaatccttcacgactaactgagaagctccgctggcttttgccttctcttctaaaccttccaattc 255  Q
    ||||||||||||||| ||||| |||||||| ||||| || || |||| ||| || ||  |||||||||| ||||||||    
T  18854769 aaattcctccttcaagtcctttacgactaattgagatgccccactggatttggctttagcttctaaaccgtccaattc 18854846  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 18854946 - 18855006
Alignment:
Q  452 acatacttggcctagatcagcagtgaagcaaacaacatcacagccatagttctctctgaaa 512  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  18854946 acatacttggccaacatcagcagtgaagcaaacaacatcacagccataattctctctgaaa 18855006  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 602 - 670
Target Start/End: Original strand, 18855231 - 18855299
Alignment:
Q  602 tatacctcagccaggggacaacaaccgatgtgtctaagccaccactataagccagaacaaccttattca 670  Q
    ||||||||||||| |||||||  |||||||||||||||||||| || |||||||  |||||||||||||    
T  18855231 tatacctcagccatgggacaatgaccgatgtgtctaagccaccgctgtaagccaatacaaccttattca 18855299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 848 - 884
Target Start/End: Original strand, 6760514 - 6760550
Alignment:
Q  848 ttacatttaatcacttcaattttctcaaattattatt 884  Q
    |||||||||||||||| ||||||||||||||||||||    
T  6760514 ttacatttaatcacttaaattttctcaaattattatt 6760550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 848 - 908
Target Start/End: Complemental strand, 3523433 - 3523373
Alignment:
Q  848 ttacatttaatcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 908  Q
    ||||||| ||||||||| ||||| |||||||||||| || ||||| |||| ||||||||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 3523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 855 - 897
Target Start/End: Original strand, 52156777 - 52156819
Alignment:
Q  855 taatcacttcaattttctcaaattattattggcgtctatgtgt 897  Q
    |||||||||| |||||||||| |||||||| ||||||||||||    
T  52156777 taatcacttccattttctcaagttattattagcgtctatgtgt 52156819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 920
Target Start/End: Complemental strand, 41775258 - 41775203
Alignment:
Q  865 aattttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtg 920  Q
    ||||||||||||||||||| || | | |||| |||||||||||||| |||||||||    
T  41775258 aattttctcaaattattatcggtggccatgtcttagtgtcgtgtccggtgtctgtg 41775203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 848 - 886
Target Start/End: Original strand, 438696 - 438734
Alignment:
Q  848 ttacatttaatcacttcaattttctcaaattattattgg 886  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  438696 ttacatttaattacttcaattttcttaaattattattgg 438734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 866 - 920
Target Start/End: Complemental strand, 14227246 - 14227192
Alignment:
Q  866 attttctcaaattattattggcgtctatgtgttagtgtcgtgtccagtgtctgtg 920  Q
    ||||||||||||||||||||| ||  | |||| |||| |||||||||||||||||    
T  14227246 attttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtg 14227192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 26004248 - 26004210
Alignment:
Q  376 atcttaatagcagggactaaattgaaggattttatatac 414  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  26004248 atcttaatatcagggactaaattgatggattttatatac 26004210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 850 - 883
Target Start/End: Complemental strand, 4323147 - 4323114
Alignment:
Q  850 acatttaatcacttcaattttctcaaattattat 883  Q
    ||||||||||||||||||||||||||||| ||||    
T  4323147 acatttaatcacttcaattttctcaaattgttat 4323114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 856 - 893
Target Start/End: Original strand, 32926315 - 32926352
Alignment:
Q  856 aatcacttcaattttctcaaattattattggcgtctat 893  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  32926315 aatcacttcaattttcttaaattattattggtgtctat 32926352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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