View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_high_10 (Length: 363)
Name: NF20364_high_10
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 43379066 - 43379298
Alignment:
| Q |
19 |
ggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatattgttacggtaaagcatatactatatgatttgttgtcatata |
118 |
Q |
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| T |
43379066 |
ggtggaatttcacttcagtccctcttgtgagttaattgataactgattgtaccatatattgtaacggtaaagcatg--ctatacaatttgttgccatata |
43379163 |
T |
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| Q |
119 |
tactttgacacaagcagtagtgacaa--ctttaacggttggaagcggcggcgactgcggtgatgataacgacatgtgatattgagggtgagttgggtgag |
216 |
Q |
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| T |
43379164 |
--ctttgacacaagcagtagcgacaaagctttaccggtttgaagcggcggtgacagcggcgaagataacgacatgtgttattgagggtgagttgggcaag |
43379261 |
T |
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| Q |
217 |
gtaacgtggagtagaaggggaggatgctgcctctgta |
253 |
Q |
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| T |
43379262 |
gcaacgtggagtagaaggggaggatgatgcctctgta |
43379298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 11339647 - 11339772
Alignment:
| Q |
19 |
ggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatattgttacggtaaagcatatactatatgatttgttgtcatata |
118 |
Q |
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| T |
11339647 |
ggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatatggttacggtaaagcatatactatatgatttgttgtcatata |
11339746 |
T |
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| Q |
119 |
tactttgacacaagcagtagtgacaa |
144 |
Q |
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| T |
11339747 |
tactttgacacaagcagtagtgacaa |
11339772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 11343582 - 11343634
Alignment:
| Q |
229 |
agaaggggaggatgctgcctctgtatggactataaggggcagctgcggcggcg |
281 |
Q |
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| T |
11343582 |
agaaggggaggatgccgcctctgtatggactgtaaggggcagttgcggcggcg |
11343634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 13207840 - 13208069
Alignment:
| Q |
19 |
ggtggaatttcacttcaatccctcttgtgagttaattgataattgattgtaccagatattgttacggtaaagcatatactatatgatttgttgtcatata |
118 |
Q |
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| T |
13207840 |
ggtggaatttcacttcagtccctcttgcgagttaattgataactgattgtaccatatattgtaacgataaagcatg--ctatataatttgctgccatata |
13207937 |
T |
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| Q |
119 |
tactttgacacaagcagtagtgacaa--ctttaacggttggaagcggcggcgactgcggtgatgataacgacatgtgatattgagggtgagttgggtgag |
216 |
Q |
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| T |
13207938 |
--ctttgacacaagcagtagtgacaaagctttaccggtttgaagcggtggtgacagcggcgaagataacaacatgtgttattgagggtgagttgggcaag |
13208035 |
T |
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| Q |
217 |
gtaacgtggagtagaaggggaggatgctgcctct |
250 |
Q |
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| T |
13208036 |
gcaacgtggagtagaaggggaggatgctgcctct |
13208069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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