View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_high_20 (Length: 237)
Name: NF20364_high_20
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23312378 - 23312154
Alignment:
| Q |
1 |
ttagtcagaattttcctcaaatttatcatcttcagtctttcttataggcaagggataaagcattgcttcctgttgctcccatttataagtattgccttgt |
100 |
Q |
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| T |
23312378 |
ttagtcagaattttcctcaaatttatcatcttcagtctttcttataggcaagggataaagcattgcttcctgttgctcccatttataagtattgccttgt |
23312279 |
T |
|
| Q |
101 |
ttcagtatcaaacatactgaccacaacttgtcaatatgaggtaagctataaacnnnnnnnattcctgtatgtttatgcagtgttatcaaccgcggattgt |
200 |
Q |
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| T |
23312278 |
ttcagtatcaaacatactgaccacaacttgtcaatatgaggtaagctataaactttctttgttcctgtatgtttatgcagtgttatcaaccgcggattgt |
23312179 |
T |
|
| Q |
201 |
gaaaaatagcaatttgttcaaattg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
23312178 |
gaaaaatagcaatttgttcaaattg |
23312154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 41143690 - 41143583
Alignment:
| Q |
38 |
tttcttataggcaagggataaagcattgcttcctgttgctcccatttataagtattgccttgtttcagtatcaaacatactgaccacaacttgtcaatat |
137 |
Q |
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||||||||||||||| | ||||||||| || || ||||||||||||||||||| |||||| || ||| ||||||| || |||||||||||||| ||| |
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| T |
41143690 |
tttcttataggcaagtaaaaaagcattggacccagtggctcccatttataagtattcccttgtgtcggtaacaaacattctaaccacaacttgtcagtat |
41143591 |
T |
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| Q |
138 |
gaggtaag |
145 |
Q |
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| T |
41143590 |
gaggtaag |
41143583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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