View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_high_21 (Length: 226)
Name: NF20364_high_21
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 41218786 - 41218585
Alignment:
| Q |
10 |
aaatttgtttcataagattctaggatgctaatagtttttcctaatcattcaactgtttctttacaataagccaaatataaattgtttttctgctagatca |
109 |
Q |
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| T |
41218786 |
aaatttggtttataagattctaggatgctaatagtttttcttaatcattcaactgtttctttacaataagccaaatataaattgtttttctgctagatca |
41218687 |
T |
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| Q |
110 |
tgttatcgtgcagtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaaataacaaaa |
209 |
Q |
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| T |
41218686 |
tgttatcgtgcagtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaaataacaaaa |
41218587 |
T |
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| Q |
210 |
gt |
211 |
Q |
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| T |
41218586 |
gt |
41218585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 41224196 - 41224157
Alignment:
| Q |
139 |
tatatgatggaaattgcattcattcttgatatgaattaat |
178 |
Q |
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| T |
41224196 |
tatatgatggaaattacattcattcttgatatgaaataat |
41224157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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