View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20364_high_5 (Length: 633)

Name: NF20364_high_5
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20364_high_5
NF20364_high_5
[»] chr3 (10 HSPs)
chr3 (185-622)||(24919638-24920072)
chr3 (420-622)||(24982042-24982244)
chr3 (270-621)||(25085035-25085369)
chr3 (417-622)||(24497240-24497445)
chr3 (352-622)||(24923378-24923646)
chr3 (413-621)||(31825534-31825742)
chr3 (421-621)||(21584582-21584782)
chr3 (36-134)||(24919494-24919592)
chr3 (164-221)||(22126255-22126312)
chr3 (421-458)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (424-621)||(10575384-10575581)
chr7 (429-615)||(39954838-39955024)
chr7 (476-621)||(354401-354547)
chr7 (512-621)||(10580784-10580893)
[»] chr8 (1 HSPs)
chr8 (421-621)||(14261017-14261217)
[»] chr2 (1 HSPs)
chr2 (452-594)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (446-600)||(22898571-22898725)
chr4 (446-600)||(22950239-22950393)
chr4 (429-615)||(53328717-53328903)
[»] chr5 (1 HSPs)
chr5 (437-600)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 185 - 622
Target Start/End: Original strand, 24919638 - 24920072
Alignment:
Q  185 agtgttaatctaaattcattaacacttgcacataactctgtaaactaatcgaagtactacttttcattagatttcaatatttctgaaactgaaaaagttt 284  Q
    |||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24919638 agtgttaatctaaattcattaaaacttgcacataact--gtaaattaatcgaagtactacttttcattagatttcaatatttctgaaactgaaaaagttt 24919735  T
Q  285 cgatctactcgagaatcacttataacatattaccctaaacatcattgaaactttctatggtgcaattgcatattcaaattaaagtcttaaggcaaaagaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||    
T  24919736 cgatctactcgagaatcacttataacatattaccctaaacatcattgaaactttctaaggtgcaattgcatattcaaattaaagtc-taaggcaaaataa 24919834  T
Q  385 aat-aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatc 483  Q
    ||| |||||||||||||| ||||||||| |||| | |||  | |||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||    
T  24919835 aataaaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatc 24919933  T
Q  484 catggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttca 583  Q
    |||||| || || ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  24919934 catggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttca 24920033  T
Q  584 tagatcaaaccactgattctcttaacaccacctcttctt 622  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  24920034 tagatcaaaccgctgattctcttcacaccacctcttctt 24920072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 420 - 622
Target Start/End: Complemental strand, 24982244 - 24982042
Alignment:
Q  420 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  520 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctctt 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24982144 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctctt 24982045  T
Q  620 ctt 622  Q
    |||    
T  24982044 ctt 24982042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 270 - 621
Target Start/End: Complemental strand, 25085369 - 25085035
Alignment:
Q  270 aaactgaaaaagtttcgatctactcgagaatcacttataacatattaccctaaacatcattgaaactttctatggtgcaattgcatattcaaattaaagt 369  Q
    |||||||| ||| ||||||||| | |||||||| || | |||||||||||||||||||| |||| |||||||  |||||||| ||            |||    
T  25085369 aaactgaataagcttcgatctaattgagaatcaattgtcacatattaccctaaacatcaatgaagctttctaatgtgcaattaca------------agt 25085282  T
Q  370 cttaaggcaaaagaaaataa-aaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaa 468  Q
    || ||||||||||||||||| ||||||||||||||||| |||| ||      |||||||||||| || |||||||||||||||||||| |||||||||||    
T  25085281 ct-aaggcaaaagaaaataacaaataaactaaagagtgtttcttctg-----tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaa 25085188  T
Q  469 agcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagaca 568  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25085187 agcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagaca 25085088  T
Q  569 cctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttct 621  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  25085087 cctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttct 25085035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 417 - 622
Target Start/End: Original strand, 24497240 - 24497445
Alignment:
Q  417 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctc 516  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  517 agtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 616  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24497340 agtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacct 24497439  T
Q  617 cttctt 622  Q
    ||||||    
T  24497440 cttctt 24497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 352 - 622
Target Start/End: Original strand, 24923378 - 24923646
Alignment:
Q  352 gcatattcaaatta-aagtcttaaggcaaaagaaaataaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggt 450  Q
    |||||||||||||| ||  || |||| |||||| || ||||||||||||||||||| |||| |||| | ||||||   |||| || || |||||||||||    
T  24923378 gcatattcaaattacaaagctaaaggaaaaagataaaaaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggt 24923474  T
Q  451 tcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcc 550  Q
    |||||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || |||||||| ||||||||||||    
T  24923475 tcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctcc 24923574  T
Q  551 aagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttctt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923575 aagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttctt 24923646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 413 - 621
Target Start/End: Original strand, 31825534 - 31825742
Alignment:
Q  413 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgt 512  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  513 gctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacacc 612  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  31825634 gctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacacc 31825733  T
Q  613 acctcttct 621  Q
    |||||||||    
T  31825734 acctcttct 31825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 421 - 621
Target Start/End: Original strand, 21584582 - 21584782
Alignment:
Q  421 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 520  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  521 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 620  Q
    || ||||| |||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  621 t 621  Q
    |    
T  21584782 t 21584782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 24919494 - 24919592
Alignment:
Q  36 ttatgtaaatcatgcttagtatgcctataataaatttgatgaatcacaacaaaattttttatcatgattttggttagtttcaattcaagtacttgtttt 134  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  24919494 ttatgtaaatcctgtttagtatgcctataataaatttgatgaatcacaacacaattttctatcatgattttggttagtttcaattcaagtccttgtttt 24919592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 22126255 - 22126312
Alignment:
Q  164 tgttaacgtggtgtcaaattcagtgttaatctaaattcattaacacttgcacataact 221  Q
    |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  22126255 tgttaatgtggtgtcaaattcagtgttaatctaaatacattaatacttgcacataact 22126312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 458
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  421 tcttcttcaaccaccgaaaccatagagggttcttcctt 458  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 424 - 621
Target Start/End: Complemental strand, 10575581 - 10575384
Alignment:
Q  424 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 523  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  524 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttct 621  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttct 10575384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 429 - 615
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  429 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 528  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  529 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 615  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| ||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 476 - 621
Target Start/End: Complemental strand, 354547 - 354401
Alignment:
Q  476 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 575  Q
    ||||||||||| || || | |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  576 tttcttcataga-tcaaaccactgattctcttaacaccacctcttct 621  Q
    |||| ||||||| | ||||||||||| ||||| ||||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttct 354401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 512 - 621
Target Start/End: Complemental strand, 10580893 - 10580784
Alignment:
Q  512 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 611  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  612 cacctcttct 621  Q
    || |||||||    
T  10580793 caactcttct 10580784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 421 - 621
Target Start/End: Original strand, 14261017 - 14261217
Alignment:
Q  421 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 520  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  521 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 620  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  621 t 621  Q
    |    
T  14261217 t 14261217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 452 - 594
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  452 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 551  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  552 agaagatcttcaagacacctctggtttcttcatagatcaaacc 594  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 600
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  446 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 545  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  546 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 600  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 600
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  446 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 545  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  546 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 600  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 615
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  429 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 528  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  529 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 615  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 600
Target Start/End: Original strand, 26358549 - 26358712
Alignment:
Q  437 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 536  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || ||||| || || |  | ||| || |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  537 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 600  Q
    | || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| |||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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