View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20364_high_6 (Length: 506)

Name: NF20364_high_6
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20364_high_6
NF20364_high_6
[»] chr7 (11 HSPs)
chr7 (10-489)||(40001795-40002273)
chr7 (13-163)||(26282644-26282795)
chr7 (13-162)||(1365821-1365971)
chr7 (13-97)||(25609969-25610053)
chr7 (52-97)||(8358449-8358494)
chr7 (52-97)||(18015736-18015781)
chr7 (119-163)||(2263931-2263975)
chr7 (52-97)||(11672447-11672493)
chr7 (52-97)||(33419273-33419317)
chr7 (52-97)||(46221858-46221903)
chr7 (52-80)||(42161277-42161305)
[»] chr2 (11 HSPs)
chr2 (14-163)||(15457312-15457461)
chr2 (11-160)||(18916154-18916304)
chr2 (18-163)||(18173046-18173192)
chr2 (17-163)||(17117743-17117890)
chr2 (18-97)||(38985815-38985894)
chr2 (109-163)||(21747902-21747956)
chr2 (10-63)||(21747329-21747382)
chr2 (52-97)||(6530523-6530568)
chr2 (52-97)||(12269290-12269335)
chr2 (52-92)||(26151903-26151943)
chr2 (52-80)||(36481287-36481315)
[»] chr3 (8 HSPs)
chr3 (13-160)||(48627131-48627279)
chr3 (57-159)||(43905976-43906076)
chr3 (52-97)||(8364035-8364081)
chr3 (52-80)||(27729924-27729952)
chr3 (52-80)||(29387909-29387937)
chr3 (52-80)||(41707210-41707238)
chr3 (52-80)||(46791852-46791880)
chr3 (52-80)||(51939710-51939738)
[»] chr5 (11 HSPs)
chr5 (13-158)||(20975800-20975947)
chr5 (13-163)||(43511429-43511580)
chr5 (13-163)||(4734684-4734834)
chr5 (13-161)||(42291983-42292131)
chr5 (13-163)||(10591375-10591523)
chr5 (13-164)||(3349830-3349981)
chr5 (15-159)||(29156004-29156150)
chr5 (13-97)||(17514038-17514133)
chr5 (52-97)||(13656072-13656117)
chr5 (52-81)||(36718723-36718752)
chr5 (52-80)||(26377930-26377958)
[»] chr8 (11 HSPs)
chr8 (13-163)||(34524053-34524204)
chr8 (13-162)||(39698040-39698189)
chr8 (13-129)||(12531406-12531521)
chr8 (13-78)||(23567376-23567441)
chr8 (106-164)||(12531354-12531412)
chr8 (52-97)||(3445546-3445591)
chr8 (48-97)||(41666088-41666136)
chr8 (45-80)||(32098325-32098360)
chr8 (106-160)||(44665254-44665308)
chr8 (52-80)||(1003970-1003998)
chr8 (52-80)||(7857966-7857994)
[»] chr6 (10 HSPs)
chr6 (1-160)||(31860815-31860977)
chr6 (13-160)||(1093142-1093290)
chr6 (1-163)||(29308557-29308720)
chr6 (13-160)||(1690735-1690884)
chr6 (52-163)||(6360556-6360670)
chr6 (106-160)||(5877037-5877091)
chr6 (106-163)||(3515064-3515121)
chr6 (52-81)||(6754087-6754116)
chr6 (52-80)||(2618237-2618265)
chr6 (52-80)||(24455101-24455129)
[»] chr4 (8 HSPs)
chr4 (1-160)||(34982038-34982198)
chr4 (13-163)||(45172746-45172897)
chr4 (13-150)||(55134032-55134170)
chr4 (106-160)||(27632199-27632253)
chr4 (52-97)||(39372816-39372862)
chr4 (52-80)||(19661261-19661289)
chr4 (52-80)||(28463743-28463771)
chr4 (52-80)||(32130944-32130972)
[»] chr1 (5 HSPs)
chr1 (13-160)||(12971219-12971368)
chr1 (52-97)||(12884292-12884338)
chr1 (52-90)||(30899526-30899564)
chr1 (52-80)||(17487440-17487468)
chr1 (52-80)||(48722527-48722555)
[»] scaffold0035 (1 HSPs)
scaffold0035 (52-97)||(22919-22965)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 489
Target Start/End: Original strand, 40001795 - 40002273
Alignment:
Q  10 agaagaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaannnnnnnnaggc 109  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||        ||||    
T  40001795 agaagaactaaagtctagaaaaacctcaaacgtgtaaagaagtaacatatatattttttatttaagtaggggtgggtattagagttaattttttttaggc 40001894  T
Q  110 ccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccgacctgtttttaatgtagtgcatgtttggtgtaactctcgtaaaatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40001895 ccatagcttttggaggcccggcttaattgagcaccttgcactctctcaaggccgacctgtttttaatgtagtgcatgtttggtgtaactctcgtaaaatt 40001994  T
Q  210 atggaggctcaccgtgatttcgggtaatccaccacaataccaagtagacactttgtttgcaagtttggaggagaagaggggaaaactttgtgtaaaatga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  40001995 atggaggctcaccgtgatttcgggtaatccaccacaataccaagtagacattttgtttgcgagtttggagaagaagaggggaaaactttgtgtaaaatga 40002094  T
Q  310 aggaggaaaagaaaatggaagaaagggatggtctcccaactattgaaaaggggataaaaaatcctcttaaatttaagaaactaaaaaattgtattagaga 409  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  40002095 aggaggaaaagaaaatggaagaaa-ggatggtttcccaactattgaaaaggggataaaaaatcctcttaaatttaagaaattcaaaaattgtattagaga 40002193  T
Q  410 aggactttggaagatttagataaagaaaattgttaattatcgcgagataacatatttaacatttcacggatgactatttt 489  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  40002194 aggactttggaaggtttagataaagaaaattgttaattatcgcgagataacatatctaacatttcacgaatgactatttt 40002273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 26282644 - 26282795
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||         |||||     
T  26282644 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaattttttctgaggcct 26282743  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  26282744 atagcttttggaggcccggcttgattgagtaccttgcactccctcaaggccg 26282795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 1365971 - 1365821
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttt-tatttaagtggggatggatattagagttaa-nnnnnnnnaggcc 110  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||         |||||    
T  1365971 agaactaaagtctagaagaaactcaaacgtgtaaagaagtaacatatatatttttatatttaagtgggg-tgggtattagagttaattttttcggaggcc 1365873  T
Q  111 catagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggcc 162  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  1365872 catagattttggaggcccggcttgattgagcaccttgcactccctcaaggcc 1365821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 25610053 - 25609969
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||   |||| |||||||||||||||||| ||||||||||||||| ||| | ||| ||||||||||||    
T  25610053 agaactaaagtctagaaaaaacccaaatgtgtaaagaagtaacatacatattttttatttaaatggaggtgggtattagagttaa 25609969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 8358449 - 8358494
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||    
T  8358449 taacatatatattttttatttaagtgagggtggatattagatttaa 8358494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 18015736 - 18015781
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  18015736 taacatatatattttttatttaagtgggggtgggtattagatttaa 18015781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 2263975 - 2263931
Alignment:
Q  119 ttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||    
T  2263975 ttggaggtccggcttaattgagcaccttgcactctctcaaggccg 2263931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 11672493 - 11672447
Alignment:
Q  52 taacatatatattttttatttaagt-ggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  11672493 taacatatatattttttatttaagtggggggtggatattagatttaa 11672447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 33419273 - 33419317
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  33419273 taacatatatattttttatttaagtgggg-tggttattagatttaa 33419317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 46221858 - 46221903
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||| ||| ||| ||||||| ||||    
T  46221858 taacatatatattttttatttaagtaggggtgggtattagatttaa 46221903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 42161277 - 42161305
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  42161277 taacatatatattttttatttaagtgggg 42161305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 15457461 - 15457312
Alignment:
Q  14 gaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaannnnnnnnaggcccat 113  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||        ||||||||    
T  15457461 gaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaatttttctgaggcccat 15457362  T
Q  114 agcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    | |||||||||||||||||| |||||||||||||||||  ||||||||||    
T  15457361 aacttttggaggcccggcttgattgagcaccttgcactctctcaaggccg 15457312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 18916154 - 18916304
Alignment:
Q  11 gaagaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggc 109  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||         ||||    
T  18916154 gaagaactaaagtctagaaaaacctcaaacgtgtaaaaaagtaacatatatattttttatttaagtgggggtgggtattagagttaatttttttttaggc 18916253  T
Q  110 ccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  18916254 ccatagctattggaggcccgacttgattgagcaccttgcacttcctcaagg 18916304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 18173046 - 18173192
Alignment:
Q  18 taaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggcccatagc 116  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||         ||| |||||||    
T  18173046 taaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaattttttctgaggtccatagc 18173145  T
Q  117 ttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    | ||||||||||||||| ||||||||||||||||| |||||| ||||    
T  18173146 tcttggaggcccggcttgattgagcaccttgcactccctcaaagccg 18173192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 17117743 - 17117890
Alignment:
Q  17 ctaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggcccatag 115  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||          |||||||||    
T  17117743 ctaaaatctagaaaaaattcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgagtattagatttaattttttgtggggcccatag 17117842  T
Q  116 cttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
     ||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  17117843 tttttggaggtccggcttgattgagcaccttacacttcctcaaggccg 17117890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 38985815 - 38985894
Alignment:
Q  18 taaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  38985815 taaagtttagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggggtggggtattagagttaa 38985894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 21747902 - 21747956
Alignment:
Q  109 cccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  21747902 cccatagcttttggaagcccggcttgattgagcaccttgcactccctcaaggccg 21747956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 21747329 - 21747382
Alignment:
Q  10 agaagaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatat 63  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  21747329 agaagaactaaagtctagaaaaacctcaaacgtgtaaaaaagtaatatatatat 21747382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 6530568 - 6530523
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||    
T  6530568 taacgtatatattttttatttaagtgggggtggatattagatttaa 6530523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 12269335 - 12269290
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||  ||| ||||||||||| ||||    
T  12269335 taacatatatattttttatttaagctggggtggatattagatttaa 12269290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 26151903 - 26151943
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattaga 92  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  26151903 taacatatatattttttatttaaatgggggtgggtattaga 26151943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 36481315 - 36481287
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  36481315 taacatatatattttttatttaagtgggg 36481287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 48627131 - 48627279
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||         ||||||    
T  48627131 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagagttaattttttatgaggccc 48627230  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  48627231 atagcttttggaggcccggcttgattgagcaccttgcaccccctcaagg 48627279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 43905976 - 43906076
Alignment:
Q  57 tatatattttttatttaagtggggatggatattagagttaannnnnnnnaggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctc 156  Q
    |||||||||||||||||||||||| |||||| |||||||||        || | ||||||||||||||| ||| ||| ||||||||||||||||| ||||    
T  43905976 tatatattttttatttaagtgggg-tggataatagagttaatttttttaag-ctcatagcttttggaggtccgacttgattgagcaccttgcactccctc 43906073  T
Q  157 aag 159  Q
    |||    
T  43906074 aag 43906076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 8364081 - 8364035
Alignment:
Q  52 taacatatatattttttatttaagt-ggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  8364081 taacatatatattttttatttaagtggggggtggatattagatttaa 8364035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 27729924 - 27729952
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  27729924 taacatatatattttttatttaagtgggg 27729952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 29387909 - 29387937
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  29387909 taacatatatattttttatttaagtgggg 29387937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 41707210 - 41707238
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  41707210 taacatatatattttttatttaagtgggg 41707238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 46791852 - 46791880
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  46791852 taacatatatattttttatttaagtgggg 46791880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 51939710 - 51939738
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  51939710 taacatatatattttttatttaagtgggg 51939738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 20975947 - 20975800
Alignment:
Q  13 agaactaaagtctagaaaaact--tcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaannnnnnnnaggcc 110  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||        |||||    
T  20975947 agaactaaagtctagaaaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggaggtgggtattagagttaatttttctgaggcc 20975848  T
Q  111 catagcttttggaggcccggcttaattgagcaccttgcacttcctcaa 158  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  20975847 catagcttttggaggcccggcttgattgagcaccttgcactccctcaa 20975800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 43511580 - 43511429
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||         ||||||    
T  43511580 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggaggtgggtattagatttaattttttctgaggccc 43511481  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  43511480 atagcttttggaggtccggcttgattgagcaccttgcactccctcaaggccg 43511429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 4734684 - 4734834
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||         ||||||    
T  4734684 agaactaaagtctagaaaaaactcaaacatgtaaagaagtaacatatatattttttatttaagtgggg-tgggtattagagttaattttttatgaggccc 4734782  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||    
T  4734783 atagcttttggaggcccggcttgattgagcattttgcactccctcaaggccg 4734834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 42291983 - 42292131
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||         |||||     
T  42291983 agaactaaagtttagaaaaaagtcaaacgtgtaaagaagtaacatatatattttttatttaagtgggcgtgagtattagagttaattttttctgaggcct 42292082  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggc 161  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  42292083 atagcttttggaggcccggc-taattgagcaccttgcactccctcaaggc 42292131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 10591375 - 10591523
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaannnnnnnnaggccca 112  Q
    ||||||||||||||||||||  ||||||||||||| ||  |||||||||  ||||||||||| ||||| ||| |||||||||| |        | |||||    
T  10591375 agaactaaagtctagaaaaaactcaaacgtgtaaaaaaagaacatatat--tttttatttaaatgggggtgggtattagagttgatttttctaaagccca 10591472  T
Q  113 tagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  10591473 tagcttttggaggcccggcttgattgagcaccttgcactccctcaaggccg 10591523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 3349830 - 3349981
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||| | ||||         ||||||    
T  3349830 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatgtattttttatttaagtgagg-tgggtattacaattaattttatcggaggccc 3349928  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccga 164  Q
    |||| ||||||||||| | ||| |||||||| |||||||| |||||| |||||    
T  3349929 atagattttggaggcctgacttgattgagcatcttgcactccctcaaagccga 3349981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 29156150 - 29156004
Alignment:
Q  15 aactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatatt-ttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccca 112  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||| | | | ||| ||||||| ||||         ||| |||    
T  29156150 aactatagtctagaaaaaactcaaacgtgtaaagaagtaacatatatatttttttatttaaatagaggtgggtattagatttaattttttctgaggtcca 29156051  T
Q  113 tagcttttggaggcccggcttaattgagcaccttgcacttcctcaag 159  Q
    || |||||||||| |||| || |||||||| |||||||| |||||||    
T  29156050 taacttttggaggtccggtttgattgagcatcttgcactccctcaag 29156004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 17514038 - 17514133
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaac-----------atatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||| |||||||||||||||||||||           ||||||||||||||||||||||||| ||| ||||||| ||||    
T  17514038 agaactaaagtctagaaaaacctcaaacgtgtaaagaagtaacattttttttttatatatattttttatttaagtgggggtgggtattagatttaa 17514133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 13656117 - 13656072
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||| | ||| ||||||| ||||    
T  13656117 taacatatatattttttatttaagtggaggtggttattagatttaa 13656072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 36718723 - 36718752
Alignment:
Q  52 taacatatatattttttatttaagtgggga 81  Q
    ||||||||||||||||||||||||||||||    
T  36718723 taacatatatattttttatttaagtgggga 36718752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 26377930 - 26377958
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  26377930 taacatatatattttttatttaagtgggg 26377958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 34524053 - 34524204
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||         ||||||    
T  34524053 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtgggtattagatttaattttttctgaggccc 34524152  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
     ||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  34524153 gtagcttttggaggtccggcttgattgagcaccttgcactccctcaaggccg 34524204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 39698040 - 39698189
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaannnnnnnnaggccca 112  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||        || ||||    
T  39698040 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggaggtgggtattaaagttaatttttctgagaccca 39698139  T
Q  113 tagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggcc 162  Q
    || |||||||||| ||  ||||||||| ||||||||| | ||||||||||    
T  39698140 taacttttggaggtccaacttaattgaacaccttgcattccctcaaggcc 39698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 12531521 - 12531406
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaannnnnnnnaggccca 112  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| |        ||| |||    
T  12531521 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatctattttttatttaagtgggg-tgggtattagagttgatttttctgaggtcca 12531423  T
Q  113 tagcttttggaggcccg 129  Q
    |||||||||||||||||    
T  12531422 tagcttttggaggcccg 12531406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 23567376 - 23567441
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtgg 78  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||    
T  23567376 agaactaaagtctagaaaaacctcaaacgtgtaaaaaagtaccatatatattttttatttaagtgg 23567441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 12531412 - 12531354
Alignment:
Q  106 aggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccga 164  Q
    |||||| ||||||||||||||||| | | ||||||||||||||| |||||||| |||||    
T  12531412 aggcccgtagcttttggaggcccgacgtgattgagcaccttgcatttcctcaaagccga 12531354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 3445591 - 3445546
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  3445591 taacatatatattttttatttaagtgggggtgggtattagatttaa 3445546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 41666088 - 41666136
Alignment:
Q  48 gaagtaacatatatattttttatttaagtggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  41666088 gaagtaacatatatattttttatttaagtggggttgg-tattagacttaa 41666136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 32098325 - 32098360
Alignment:
Q  45 aaagaagtaacatatatattttttatttaagtgggg 80  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32098325 aaagaagtaacatatatattttttaattaagtgggg 32098360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 44665254 - 44665308
Alignment:
Q  106 aggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||||| |||| |||||||||||||||| |||||||||||| |||  ||||||||    
T  44665254 aggcccgtagcatttggaggcccggcttgattgagcaccttacacaccctcaagg 44665308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 1003998 - 1003970
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  1003998 taacatatatattttttatttaagtgggg 1003970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 7857994 - 7857966
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  7857994 taacatatatattttttatttaagtgggg 7857966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31860977 - 31860815
Alignment:
Q  1 tgtcgagagagaagaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa--- 97  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||       
T  31860977 tgtccagatagaagaactaaagtctagaaaaacctcaaacgtgtaaagaagtaacatatatattttttatttaggtgggggtgggtattagagttaattt 31860878  T
Q  98 nnnnnnnnaggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
            ||||||||||||||| |||| ||||||| ||||||||||||||| | ||||||||    
T  31860877 ttttttttaggcccatagcttttcgaggtccggcttgattgagcaccttgcattccctcaagg 31860815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 1093142 - 1093290
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||| || |||||||||||||||||| ||||||||||||||||| ||| ||||||||||||         ||||||    
T  1093142 agaactaaagtctagaaaaaactcaaacatgcaaagaagtaacatatatagtttttatttaagtgggggtgggtattagagttaattttttcggaggccc 1093241  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||  ||||| ||||||| ||||||||||||||||||||| ||||||||    
T  1093242 ataaattttgaaggcccgacttaattgagcaccttgcactccctcaagg 1093290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29308557 - 29308720
Alignment:
Q  1 tgtcgagagagaagaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nn 99  Q
    |||| ||| |||| ||||||||| ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||       
T  29308557 tgtccagatagaaaaactaaagtttagaaaaaactcaaacgtgtaaagaagtaccatatatattttttatttaagtgggggtgggtattagagttaattt 29308656  T
Q  100 nnnnnnaggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
          | ||| ||| ||| |||||||||| ||| ||||||||||||||||| |||||||||||    
T  29308657 tttcggaagcctataacttctggaggcccgacttgattgagcaccttgcactccctcaaggccg 29308720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 1690735 - 1690884
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa--nnnnnnnnaggcc 110  Q
    ||||||||| | ||||||||  ||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||          |||||    
T  1690735 agaactaaaatttagaaaaaactcaaacgtgtaaagaagtaacatatatatattttatttaagtggaggtgggtattagagttaatttttttctgaggcc 1690834  T
Q  111 catagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||||||||||||||| |||||| |||||||| |||||||| ||| ||||    
T  1690835 catagcttttggaggctcggcttgattgagcatcttgcactcccttaagg 1690884  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 6360670 - 6360556
Alignment:
Q  52 taacatatatattttttatttaagt-ggggatggatattagagttaa--nnnnnnnnaggcccatagcttttggaggcccggcttaattgagcaccttgc 148  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||          |||||| |||| |||||||||| ||| | ||||||||||||||    
T  6360670 taacatatatattttttatttaagtggggggtggatattagatttaattttcgttagaggcccgtagcatttggaggcctggcctgattgagcaccttgc 6360571  T
Q  149 acttcctcaaggccg 163  Q
    ||  |||||||||||    
T  6360570 acaccctcaaggccg 6360556  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 5877037 - 5877091
Alignment:
Q  106 aggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||| || |||||    
T  5877037 aggcccatagctcttggaggcccgacttgattgagcaccttgcactcccccaagg 5877091  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 3515064 - 3515121
Alignment:
Q  106 aggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    |||||| |||| |||| |||||||||||  |||||||||||||||  |||||||||||    
T  3515064 aggcccgtagcatttgtaggcccggcttggttgagcaccttgcacaccctcaaggccg 3515121  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 6754116 - 6754087
Alignment:
Q  52 taacatatatattttttatttaagtgggga 81  Q
    ||||||||||||||||||||||||||||||    
T  6754116 taacatatatattttttatttaagtgggga 6754087  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 2618265 - 2618237
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  2618265 taacatatatattttttatttaagtgggg 2618237  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 24455129 - 24455101
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  24455129 taacatatatattttttatttaagtgggg 24455101  T

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Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 34982198 - 34982038
Alignment:
Q  1 tgtcgagagagaagaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nn 99  Q
    |||| ||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||       
T  34982198 tgtccagatagaaaaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtaggggtgggtattagatttaattt 34982099  T
Q  100 nnnnnnaggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
          |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  34982098 tttctgaggcccatagcttttggaggcccggcttgattgagcacattgcactccctcaagg 34982038  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 45172746 - 45172897
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||         |||| |    
T  45172746 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtgggggtggatattagatttaattttttttgaggcac 45172845  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcacttcctcaaggccg 163  Q
    ||| |||||| ||| ||||||| ||||||||||||||||| |||||||||||    
T  45172846 ataacttttgtaggtccggcttgattgagcaccttgcactccctcaaggccg 45172897  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 55134170 - 55134032
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagtggggatggatattagagttaa-nnnnnnnnaggccc 111  Q
    |||||||||||||| |||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||         || | |    
T  55134170 agaactaaagtctacaaaaaactcaaacgtgtaaagaagtaatatatatattttttatttaagtgggggtgggtattagagtaaattttttcgaagacac 55134071  T
Q  112 atagcttttggaggcccggcttaattgagcaccttgcac 150  Q
    |||||||||| |||||||||||  |||||||||||||||    
T  55134070 atagcttttgaaggcccggcttgtttgagcaccttgcac 55134032  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 27632253 - 27632199
Alignment:
Q  106 aggcccatagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    |||||| |||| |||||||||||||| || |||||||||||||||| ||||||||    
T  27632253 aggcccgtagcatttggaggcccggcctagttgagcaccttgcactccctcaagg 27632199  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 39372816 - 39372862
Alignment:
Q  52 taacatatatattttttatttaagtgg-ggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||||    
T  39372816 taacatatatattttttatttaagtggcgggtggatattagatttaa 39372862  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 19661289 - 19661261
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  19661289 taacatatatattttttatttaagtgggg 19661261  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 28463743 - 28463771
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  28463743 taacatatatattttttatttaagtgggg 28463771  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 32130944 - 32130972
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  32130944 taacatatatattttttatttaagtgggg 32130972  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 12971368 - 12971219
Alignment:
Q  13 agaactaaagtctagaaaaacttcaaacgtgtaaagaagtaacatatatattttttatttaagt-ggggatggatattagagttaa-nnnnnnnnaggcc 110  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||         |||||    
T  12971368 agaactaaagtctagaaaaaactcaaacgtgtaaagaagtaacatatatattttttatttaagtggggggtgggtattagagttaattttttctgaggcc 12971269  T
Q  111 catagcttttggaggcccggcttaattgagcaccttgcacttcctcaagg 160  Q
    ||| ||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  12971268 cattgctcttggaggcccggcttgattgagcaccttgcactccctcaagg 12971219  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 12884292 - 12884338
Alignment:
Q  52 taacatatatattttttatttaagt-ggggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  12884292 taacatatatattttttatttaagtaggggttggatattagatttaa 12884338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 30899564 - 30899526
Alignment:
Q  52 taacatatatattttttatttaagtggggatggatatta 90  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  30899564 taacatatatattttttatttaagtgggggtgggtatta 30899526  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 17487440 - 17487468
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  17487440 taacatatatattttttatttaagtgggg 17487468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 48722527 - 48722555
Alignment:
Q  52 taacatatatattttttatttaagtgggg 80  Q
    |||||||||||||||||||||||||||||    
T  48722527 taacatatatattttttatttaagtgggg 48722555  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 22919 - 22965
Alignment:
Q  52 taacatatatattttttatttaagtgg-ggatggatattagagttaa 97  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||||    
T  22919 taacatatatattttttatttaagtggagggtggatattagatttaa 22965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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