View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_11 (Length: 364)
Name: NF20364_low_11
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 42834106 - 42834443
Alignment:
| Q |
10 |
attatactccatcttggaagaagatgttacttaaatcaggtcttcgacctctcaatattgatttgtctcttagctctgatgatgatacttgtagctcggt |
109 |
Q |
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| T |
42834106 |
attatactccatattggaagaagatgttacttaaatcaggtcttcgacctctcaatattgatttgtctcttagctctgatgatgatacttgtagctcggt |
42834205 |
T |
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| Q |
110 |
ggtttctacaaacgtgggctgtgaaacacctttatcgtcttgggatttcgaacctgaaattgatatcaacttagaagagaactatgttgatgtagaagaa |
209 |
Q |
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| T |
42834206 |
ggtttctacaaacgtgggctgtgaaacacctttatcgtcttgggatttcgaacctgaaattgatatcaacttagaagagaactatgttgatgtagaagaa |
42834305 |
T |
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| Q |
210 |
caaaactatatggacaatagaagttatgatgatttgatcnnnnnnnttattgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcag |
309 |
Q |
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| T |
42834306 |
caaaacgatatggacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcag |
42834405 |
T |
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| Q |
310 |
aagaagagaatataaagttgaaggtccaagttgggaat |
347 |
Q |
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| T |
42834406 |
aagaagagaatataaagttgaaggtccaagttgggaat |
42834443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 42843043 - 42843163
Alignment:
| Q |
222 |
gacaatagaagttatgatgatttgatcnnnnnnnttattgaaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
321 |
Q |
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| T |
42843043 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
42843142 |
T |
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| Q |
322 |
taaagttgaaggtccaagttg |
342 |
Q |
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| T |
42843143 |
taaagttgaaggttcaagttg |
42843163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 42819167 - 42819242
Alignment:
| Q |
267 |
gaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaatataaagttgaaggtccaagttg |
342 |
Q |
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| T |
42819167 |
gaggaagagctaagagttaccaatttaaagcttcaactttcggaaaaagaggttatcaacttgaaggttcaagttg |
42819242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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