View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_13 (Length: 342)
Name: NF20364_low_13
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 1134094 - 1133770
Alignment:
| Q |
1 |
tgaaagaatggagtaatttggtcttataaattgataaatactattagaatttctgtctaagctaaaaatatagaatatcggtttaagctaaaaatatatt |
100 |
Q |
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| T |
1134094 |
tgaaagaatggagtaatttggtcttataaattgatagatactattagaatttctgtctaagctaaaaatatagaatatcggtttaagctaaaaatatatt |
1133995 |
T |
|
| Q |
101 |
nnnnnnnntgggagacataataacatgttaaattgataatttcataagtgtatatttttt-gtcaataacttcataaatgtatctaaaactaagtgaata |
199 |
Q |
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| T |
1133994 |
aaaaaaaatgggagacataataacatgttaaattgataatttcataagtgtatatttttttgtcaataacttcataaatgtatctaaaactaagtgaata |
1133895 |
T |
|
| Q |
200 |
atgttatagacacatttgataaatttagataaagagaatgttctttttaagaactcgtaaatagcctaagaatcaattaattagagtgatcaatctcatc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1133894 |
gtgttatagacacatttgataaatttagataaagagaatgttctttttaagaacccgtaaatagcctaagaatcaattaattagagtgatcaatctcatc |
1133795 |
T |
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| Q |
300 |
gtctattaacaatacatcaacttaa |
324 |
Q |
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||||||||||||||||||||||||| |
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| T |
1133794 |
gtctattaacaatacatcaacttaa |
1133770 |
T |
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