View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20364_low_14 (Length: 341)

Name: NF20364_low_14
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20364_low_14
NF20364_low_14
[»] chr6 (2 HSPs)
chr6 (32-328)||(1134150-1134449)
chr6 (224-329)||(28050086-28050193)
[»] chr2 (15 HSPs)
chr2 (37-312)||(28167096-28167375)
chr2 (59-133)||(30545678-30545752)
chr2 (237-312)||(30547810-30547885)
chr2 (186-312)||(44904691-44904823)
chr2 (37-312)||(28165672-28165949)
chr2 (48-139)||(44906077-44906169)
chr2 (237-312)||(44905941-44906017)
chr2 (237-331)||(31559282-31559376)
chr2 (223-302)||(5696154-5696234)
chr2 (219-312)||(5694816-5694911)
chr2 (83-133)||(44904592-44904642)
chr2 (37-117)||(5696333-5696414)
chr2 (270-331)||(30545994-30546054)
chr2 (37-108)||(3751374-3751446)
chr2 (237-302)||(28563724-28563793)
[»] chr1 (14 HSPs)
chr1 (37-312)||(13222928-13223204)
chr1 (196-312)||(13229040-13229160)
chr1 (237-329)||(9419547-9419639)
chr1 (207-331)||(12097684-12097809)
chr1 (186-294)||(40767784-40767896)
chr1 (168-330)||(12096018-12096182)
chr1 (60-110)||(43882092-43882142)
chr1 (237-302)||(33753855-33753922)
chr1 (58-133)||(40767650-40767726)
chr1 (83-129)||(46605874-46605920)
chr1 (61-109)||(28360807-28360856)
chr1 (219-301)||(28253388-28253472)
chr1 (237-301)||(35381595-35381659)
chr1 (223-302)||(43882248-43882328)
[»] chr4 (7 HSPs)
chr4 (36-312)||(34539570-34539844)
chr4 (37-300)||(11148364-11148625)
chr4 (47-312)||(34538150-34538419)
chr4 (223-302)||(2671736-2671816)
chr4 (77-133)||(41246502-41246558)
chr4 (60-148)||(2671578-2671668)
chr4 (223-302)||(20946055-20946135)
[»] chr7 (9 HSPs)
chr7 (37-322)||(38758079-38758362)
chr7 (219-307)||(19639747-19639836)
chr7 (219-312)||(5975429-5975523)
chr7 (37-110)||(38756669-38756742)
chr7 (219-302)||(5974344-5974428)
chr7 (219-302)||(27160506-27160593)
chr7 (196-297)||(38756833-38756938)
chr7 (186-300)||(30045945-30046061)
chr7 (47-133)||(30045812-30045899)
[»] chr5 (5 HSPs)
chr5 (172-322)||(33489662-33489814)
chr5 (37-132)||(6535591-6535687)
chr5 (46-131)||(33489849-33489935)
chr5 (237-302)||(35931119-35931186)
chr5 (219-302)||(35929726-35929814)
[»] chr3 (17 HSPs)
chr3 (37-312)||(3149276-3149550)
chr3 (186-331)||(27662364-27662510)
chr3 (196-302)||(26537583-26537690)
chr3 (203-331)||(27661303-27661433)
chr3 (219-322)||(13645043-13645147)
chr3 (83-139)||(27661156-27661212)
chr3 (223-301)||(39870649-39870728)
chr3 (223-302)||(1677177-1677257)
chr3 (186-312)||(3149788-3149918)
chr3 (83-133)||(27662558-27662608)
chr3 (37-133)||(3149968-3150064)
chr3 (233-301)||(33552819-33552887)
chr3 (219-322)||(13645242-13645348)
chr3 (83-133)||(34595725-34595775)
chr3 (37-109)||(26537428-26537501)
chr3 (223-282)||(34594455-34594515)
chr3 (60-117)||(55196611-55196670)
[»] chr8 (2 HSPs)
chr8 (237-322)||(7274416-7274501)
chr8 (46-110)||(25562756-25562821)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 328
Target Start/End: Original strand, 1134150 - 1134449
Alignment:
Q  32 ggcttaaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattgg 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1134150 ggcttaaaggttcatgtaagttaacacgttttttattttagtcttcgtatcttttatgttgcgaaacaacccttgtattcacttaatcttttgaaattgg 1134249  T
Q  132 tctttgccctccgtttctatgaaagaaagnnnnnnncatagctggctaacgacacatacat-----ggaacttgatgagatgacaactgaacttagtaga 226  Q
    ||| |||| |||||||||||||||||||        |||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||    
T  1134250 tctctgccatccgtttctatgaaagaaa--aaaaaacatagctggctaacgacacatacataacatggaacttgatgagatgacaactggacttagtaga 1134347  T
Q  227 gggactaaatcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttcgtct 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1134348 gggactaaatcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttcgtct 1134447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 329
Target Start/End: Complemental strand, 28050193 - 28050086
Alignment:
Q  224 agagggactaaa-tcaaaaacgcatatttacatagggacaaaattagaaaaca-taatcatcaatttttgaaatttaaaactcattctttctaacttctt 321  Q
    |||||||||||| | |||||||||||||||| ||||||  |||||| |||| | ||| ||||||  ||| ||||||||||  |||| |||||| ||||||    
T  28050193 agagggactaaaataaaaaacgcatatttacgtagggatgaaattaaaaaaaagtaaacatcaaaatttaaaatttaaaaaccattgtttctatcttctt 28050094  T
Q  322 cgtctctc 329  Q
    | ||||||    
T  28050093 cctctctc 28050086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 37 - 312
Target Start/End: Complemental strand, 28167375 - 28167096
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 135  Q
    |||||| | ||||||||| | |||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||     
T  28167375 aaaggtccctgtaagttagcgcgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtctc 28167276  T
Q  136 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 233  Q
    |||| ||  |||   | ||| |||        ||| ||||| |||| ||| ||||  ||| || ||||||| || ||||||  ||||||||||||||| |    
T  28167275 tgccgtctattttcgtaaaaaaaa--aaaacgcattgctggataacagacgcatatgtggcacatgatgagttggcaactggtcttagtagagggactaa 28167178  T
Q  234 aatcaaaaacgcatatttacatagggacaaaatt---agaaaacataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    |||||||||||||| ||||||||||||| |||||   | |||||||||||||||| ||||| ||||||||| ||||||||||    
T  28167177 aatcaaaaacgcatttttacatagggacgaaattaaaaaaaaacataatcatcaaattttggaatttaaaattcattctttc 28167096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 30545678 - 30545752
Alignment:
Q  59 gtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||    
T  30545678 gtttttggttttagtctctgtatcttttttgttgcaaaacaactcttgtatttacttaatattttgaaattggtc 30545752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 30547885 - 30547810
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    |||||| | ||||||||||| |||| |||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  30547885 caaaaatgtatatttacataaggacgaaattaaaaaacataatcatcaaattttaaaatttaaaactcattctttc 30547810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 312
Target Start/End: Original strand, 44904691 - 44904823
Alignment:
Q  186 catacatggaacttgatgagatgacaactgaacttagtagagggact-aaatcaaaaacgcatatttacatagggac-aaaatt---agaaaacataatc 280  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||| |||| |||||| ||| |||||||||||||  |||||   | ||||| |||||    
T  44904691 catacatggcacttgatgagatgacaactgctcttagtagagggactaaaatgaaaaacacatttttacatagggactgaaattaaaaaaaaacgtaatc 44904790  T
Q  281 atc-aatttttgaaatttaaaactcattctttc 312  Q
    ||| |||||||||||||| |||| || ||||||    
T  44904791 atcaaatttttgaaattttaaacccaatctttc 44904823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 28165672 - 28165949
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaa-caacccttgtattcacttaatcttttgaaattggtct 134  Q
    |||||| ||||||||||| | |||||||| ||||||||  |||||||||||| ||||||||| |||||||||||||  |||||  ||||||||||||||     
T  28165672 aaaggtccatgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaaacaacccttgtattttcttaactttttgaaattggtcc 28165771  T
Q  135 ttgccctccgtttctatgaaagaaagnnnnnnncatagctggctaacga-cacatacatggaacttgatgagatgacaactgaacttagtagagggacta 233  Q
    | | | || |||||  | ||| |||        ||| |||||||||||  | ||||| ||  |||||||||||||  |||||  ||||||||||||||||    
T  28165772 tcgtcgtcagtttccgtaaaaaaaa-----aagcattgctggctaacggtcgcatacgtgacacttgatgagatggaaactgctcttagtagagggacta 28165866  T
Q  234 aatc-aaaaacgcatatttacatagggac--aaaattagaaaacataatcatc-aatttttgaaatttaaaactcattctttc 312  Q
    || | |||| ||||| |||||||| ||||  ||| | | ||||| |||||||| |||||||||||||| |||| || ||||||    
T  28165867 aaacgaaaagcgcatttttacataaggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttc 28165949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 44906169 - 44906077
Alignment:
Q  48 taagttaacacgtttttgattttagtctttgtatcttttttg-ttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgcc 139  Q
    ||||||| | |||||||| ||||| || |||||||||||||  ||||||||||| | ||||||| |||||| |||||||||||||||| ||||    
T  44906169 taagttagcgcgtttttggttttaatccttgtatctttttttattgcgaaacaatctttgtatttacttaaccttttgaaattggtctctgcc 44906077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 44906017 - 44905941
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaattagaaaa-cataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    |||||| |||| ||||||||||||| |||||| |||| |||||||||||| ||||| ||||||||| | ||||||||    
T  44906017 caaaaatgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattaattctttc 44905941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 31559376 - 31559282
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttcgtctctctg 331  Q
    |||||||| |||||||||||||||  |||||| || || |||||||| | ||||||||||||||| ||| | |||| | ||||||| ||| ||||    
T  31559376 caaaaacgaatatttacatagggatgaaattaaaacacgtaatcatcgaattttgaaatttaaaaatcaatatttccaccttcttcatctttctg 31559282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 5696234 - 5696154
Alignment:
Q  223 tagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||||| | ||||||| | ||||||| |||||| ||| || ||||||||||||||||  |||||| ||||||||    
T  5696234 tagagggactaaaaccaaaaacgtaaatttacacagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaac 5696154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 5694816 - 5694911
Alignment:
Q  219 ttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaa-cataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    |||||| |||||||||| | |||||||||  || |||||||||| || ||| |||| ||||||||||||||||| || ||||||| ||| ||||||    
T  5694816 ttagtatagggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacataatcatcaatttttaaattttaaaaatcagtctttc 5694911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 44904592 - 44904642
Alignment:
Q  83 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    |||||||| |||||||||||||||||||  |||||  ||||||||||||||    
T  44904592 ttttttgtcgcgaaacaacccttgtattttcttaactttttgaaattggtc 44904642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 5696414 - 5696333
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctt-ttttgttgcgaaacaacccttgtattcacttaa 117  Q
    |||||| ||||||||||  | | |||||  |||||||||||||||||| |||||||| |||||||||  |||||| ||||||    
T  5696414 aaaggtccatgtaagtttgcgcatttttagttttagtctttgtatctttttttgttgtgaaacaacctctgtatttacttaa 5696333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 30545994 - 30546054
Alignment:
Q  270 aaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttcgtctctctg 331  Q
    |||||||||||||||| |||||||||||||||| |||| |||| | ||||||| || |||||    
T  30545994 aaaacataatcatcaaattttgaaatttaaaac-cattatttccaccttcttcctcactctg 30546054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 3751446 - 3751374
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttt-tgttgcgaaacaacccttgta 108  Q
    |||||| ||||||| ||| | | |||||  ||||||| || |||||||||| |||||||||||||||||||||    
T  3751446 aaaggtccatgtaaattagcgcattttttgttttagtattggtatctttttctgttgcgaaacaacccttgta 3751374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 28563793 - 28563724
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaatt----agaaaacataatcatcaatttttgaaatttaaaac 302  Q
    |||||| |||| ||||||||||||| |||||    | ||||||||||| |||||||||||| ||||||||    
T  28563793 caaaaatgcatttttacatagggactaaatttaaaaaaaaacataatcttcaatttttgaattttaaaac 28563724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 13222928 - 13223204
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtcttt 136  Q
    |||||| | ||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||  |    
T  13222928 aaaggtccctgtaagttagcacgtttttggttttagtccgtgtatcttttttgttgcgaaacaacccttgtatttatttaaccttttgaaattggtccct 13223027  T
Q  137 gccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-aa 234  Q
    ||| ||  ||||  | ||| |||        ||| | |||||||| ||| ||||| ||| |  ||||||| || |||||    |||||||||||||| ||    
T  13223028 gccgtctatttccgtaaaaaaaa--aaaacgcattgttggctaacagacgcatacgtggcatatgatgagttggcaactagtgttagtagagggactaaa 13223125  T
Q  235 atcaaaaacgcatatttacatagggacaaaatt-agaaaacataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    | ||||||||||| ||||||||||||| ||||| | |||||||||||||||| ||||| ||||||||| ||||||||||    
T  13223126 accaaaaacgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcattctttc 13223204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 13229160 - 13229040
Alignment:
Q  196 acttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggac-aaaatt-agaaaacataatcatcaa-tttttg 291  Q
    ||||||||||||||||||||  |||||||||||||||||| | |||||| ||| ||||||||||||| |||||| | ||||| |||||||||| ||||||    
T  13229160 acttgatgagatgacaactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaattttttg 13229061  T
Q  292 aaatttaaaactcattctttc 312  Q
    |||||| |||| || ||||||    
T  13229060 aaattttaaacccaatctttc 13229040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 9419639 - 9419547
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttcgtctctc 329  Q
    |||||||| |||||||||||||||  |||||| ||||| |||||||||| |||||||||||||||  || |||||| | ||||||| ||||||    
T  9419639 caaaaacgaatatttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaaaccaatctttccaccttcttcatctctc 9419547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 12097809 - 12097684
Alignment:
Q  207 tgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactca 305  Q
    |||||||||  |||||||||||||||||| | |||||||||| ||||  ||||||  |||||| ||||| |||| ||||||||||||| |||||||  ||    
T  12097809 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttaggtagggatgaaattaaaaaacttaattatcaatttttgaattttaaaaacca 12097710  T
Q  306 ttctttctaacttcttcgtctctctg 331  Q
      ||||||  ||||||| ||||||||    
T  12097709 acctttctttcttcttcctctctctg 12097684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 40767784 - 40767896
Alignment:
Q  186 catacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggac--aaaattagaaaacataatcat 282  Q
    ||||| ||| ||||||||||||| ||||||  |||||||||||||||||| | |||||||||| |||||||| ||||  ||| | | ||||| |||||||    
T  40767784 catacgtggcacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaacgcatttttacataaggactgaaactaaaaaaacgtaatcat 40767883  T
Q  283 c-aatttttgaaa 294  Q
    | |||||||||||    
T  40767884 caaatttttgaaa 40767896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 330
Target Start/End: Original strand, 12096018 - 12096182
Alignment:
Q  168 catagctggctaacg-acacatacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaa 265  Q
    ||||||||||||||| ||||  || ||| | ||| |||| || ||| || ||||||||||| ||||||| | |||||||||| ||||||  ||||  |||    
T  12096018 catagctggctaacggacaccaacgtggcatttggtgagttggcaattggacttagtagagtgactaaaaccaaaaacgcatttttacacggggatgaaa 12096117  T
Q  266 ttagaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttcgtctctct 330  Q
    ||| ||||| |||| ||||||||||||| |||||||  || ||||| |  ||||||| |||||||    
T  12096118 ttaaaaaacttaattatcaatttttgaattttaaaaaccaatctttttttcttcttcctctctct 12096182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 43882092 - 43882142
Alignment:
Q  60 tttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtatt 110  Q
    |||||| ||||||||  ||||||||||||||||||||||||||| ||||||    
T  43882092 tttttggttttagtccctgtatcttttttgttgcgaaacaacccctgtatt 43882142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 33753855 - 33753922
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaatta--gaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||| ||||||||||||| ||||||   ||||| ||||| |||||||||||| ||||||||    
T  33753855 caaaaacgcatttttacatagggactaaattaagaaaaacgtaatcttcaatttttgaattttaaaac 33753922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 40767650 - 40767726
Alignment:
Q  58 cgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    |||||||| ||||||||  |||||||||| |||||||||||||| | |||||||  |||||  ||||||||||||||    
T  40767650 cgtttttggttttagtccctgtatctttttttgttgcgaaacaatctttgtattttcttaactttttgaaattggtc 40767726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 46605920 - 46605874
Alignment:
Q  83 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaatt 129  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||||    
T  46605920 ttttttgttgcgaaacaacccttgtattttcttaactttttgaaatt 46605874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28360807 - 28360856
Alignment:
Q  61 ttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtat 109  Q
    ||||| |||||||| ||||||||||| ||||||||||||||| |||||||    
T  28360807 ttttggttttagtccttgtatctttttttgttgcgaaacaactcttgtat 28360856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 28253472 - 28253388
Alignment:
Q  219 ttagtagagggactaaa-tcaaaaacgcatatttacatagggacaaaatt-agaaaacataatcatcaatttttgaaatttaaaa 301  Q
    ||||||||||||||||| ||||||||| | |||||||||||||  ||||| | ||||  ||| |||||| ||||||| |||||||    
T  28253472 ttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttgaattttaaaa 28253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 35381595 - 35381659
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaa 301  Q
    |||||||| || ||||||||||||   ||||| ||||  |||||||||||||||||| |||||||    
T  35381595 caaaaacgtatttttacatagggatgtaattaaaaaatgtaatcatcaatttttgaattttaaaa 35381659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 43882248 - 43882328
Alignment:
Q  223 tagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||||| | ||||||| | |||||||||| |||  || || ||||||||||||||||  |||||| ||||||||    
T  43882248 tagagggactaaaaccaaaaacgaaaatttacatagagacggaaataaaaaacataatcatcaaaatttgaattttaaaac 43882328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 312
Target Start/End: Complemental strand, 34539844 - 34539570
Alignment:
Q  36 taaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtct 134  Q
    ||||||| ||||||||||| | |||||||| ||||| ||| |||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||     
T  34539844 taaaggtccatgtaagttagcgcgtttttggttttaatctctgtatctttttttgttgcgaaacaacccttatatttacttaaccttttgaaattggtcc 34539745  T
Q  135 ttgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggacta 233  Q
     | || ||  ||||| | ||| |||        ||| | || ||||| ||| ||||| ||  || ||||||| || ||||||  ||||||||||||||||    
T  34539744 ctaccgtctatttctgtcaaaaaaa------cgcattgttgactaacagacgcatacgtgacacatgatgagttggcaactggtcttagtagagggacta 34539651  T
Q  234 aatcaaaaacgcatatttacatagggacaaaatt--agaaaacataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    || |||||| |||| ||||||||||||| |||||  | |||||||||||||||| ||||| ||||||||| ||||||||||    
T  34539650 aaacaaaaaagcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaatttaaaattcattctttc 34539570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 300
Target Start/End: Original strand, 11148364 - 11148625
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 135  Q
    |||||| | ||||||||| | |||||||| ||||||||  | |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||      
T  11148364 aaaggtccctgtaagttagcgcgtttttggttttagtcgctatatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtccc 11148463  T
Q  136 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 233  Q
    |||| ||  ||||  | ||| |||        ||| |||||||||| |||||| || ||| || ||||||| || ||||||| ||||||||||||||| |    
T  11148464 tgccgtctatttccgtcaaaaaaa------cgcattgctggctaacagacacaaacgtggcacatgatgagttggcaactgatcttagtagagggactaa 11148557  T
Q  234 aatcaaaaacgcatatttacatagggacaaaatt-agaaaacataatcatcaatttttgaaatttaaa 300  Q
    || ||||||| ||| ||||||||||||| ||||| | |||||||||||||||| ||||| ||||||||    
T  11148558 aaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaa 11148625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 312
Target Start/End: Original strand, 34538150 - 34538419
Alignment:
Q  47 gtaagttaacacgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgccctccgt 145  Q
    |||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||  |||||  |||||||| ||||| | ||| || ||    
T  34538150 gtaagttagcacgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtattttcttaactttttgaaactggtcctcgccgtcagt 34538249  T
Q  146 ttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaac 243  Q
    |||  | ||| |||        ||| | || ||||| | | ||||| ||| ||||||||||||| ||||||  |||||||||||||||||| | ||||||    
T  34538250 ttccgtaaaaaaaa--aaaaagcattgttgactaacggtcgcatacgtggcacttgatgagatggcaactgctcttagtagagggactaaaacgaaaaac 34538347  T
Q  244 gcatatttacatagggac--aaaattagaaaacataatcatc-aatttttgaaatttaaaactcattctttc 312  Q
    |||| |||||||||||||  ||| | | ||||| |||||||| |||||||||||||| |||| || ||||||    
T  34538348 gcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttc 34538419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 2671736 - 2671816
Alignment:
Q  223 tagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||||| | ||||||||| |||||||||||||| ||| || ||||||||||||||||  |||||| ||||||||    
T  2671736 tagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaac 2671816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 41246558 - 41246502
Alignment:
Q  77 tgtatcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    ||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||    
T  41246558 tgtatcttttttgttacgaaacaacctttgtatttacataatcttttgaaattggtc 41246502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 2671578 - 2671668
Alignment:
Q  60 tttttgattttagtctttgtatctttt--ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgccctccgtttc 148  Q
    |||||| ||||||||  ||||||||||  ||||||||||||||||| |||||| ||||||  |||||| ||| |||  |||| ||||||||    
T  2671578 tttttggttttagtccctgtatcttttttttgttgcgaaacaacccctgtatttacttaacattttgacattcgtccctgccgtccgtttc 2671668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 20946055 - 20946135
Alignment:
Q  223 tagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||||| | |||||| || ||||||| |||||| ||| || |||| |||||||||||  |||||| ||||||||    
T  20946055 tagagggactaaaaccaaaaacacaaatttacacagggacgaaaataaaaaatataatcatcaaaatttgaattttaaaac 20946135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 322
Target Start/End: Complemental strand, 38758362 - 38758079
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 135  Q
    |||||| | ||||||||| | |||||||| ||||||||  |||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||      
T  38758362 aaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtccc 38758263  T
Q  136 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggact-a 233  Q
    | || ||  ||||  | ||| |||        ||| | |||||||| ||| ||||| ||| || ||||||  || ||||||  ||||||||||||||| |    
T  38758262 taccgtctatttccgtcaaaaaaa------tgcattgttggctaacagacgcatacgtggcacatgatgaattggcaactggtcttagtagagggactaa 38758169  T
Q  234 aatcaaaaacgcatatttacatagggacaaaatt-agaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttc 322  Q
    || ||||||| ||| ||||||||||||| ||||| | |||||||||||||||| ||||| ||||||||| |||||||||| | |||||||    
T  38758168 aaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcattctttccaccttcttc 38758079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 19639836 - 19639747
Alignment:
Q  219 ttagtagagggactaaatcaaaaa-cgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcatt 307  Q
    |||||||||||| |||| |||||| ||||| ||||||||||||  |||||| ||||| |||||||||| |||||||||||||||||||||    
T  19639836 ttagtagagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaactcatt 19639747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 5975523 - 5975429
Alignment:
Q  219 ttagtagagggactaaatcaaaaac-gcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    ||||||||||||||||| ||||||  ||| |||||||||||||| |||||| ||||||||||||||||  ||| |||||||||||  ||||||||    
T  5975523 ttagtagagggactaaaacaaaaaatgcaaatttacatagggacgaaattaaaaaacataatcatcaaaatttaaaatttaaaacatattctttc 5975429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 38756669 - 38756742
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttgttgcgaaacaacccttgtatt 110  Q
    |||||| | ||||||||| | |||||||| ||||||||  ||||||||||||||||||||| ||||||||||||    
T  38756669 aaaggtccctgtaagttagcgcgtttttggttttagtccctgtatcttttttgttgcgaaataacccttgtatt 38756742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 5974344 - 5974428
Alignment:
Q  219 ttagtagagggactaaa-tcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||| ||||||| | |||||| || ||||||| ||||| ||||||| ||||||||||||||||  |||||||||||||||    
T  5974344 ttagtagagcgactaaaataaaaaacacaaatttacacagggataaaattaaaaaacataatcatcaaagtttgaaatttaaaac 5974428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 27160506 - 27160593
Alignment:
Q  219 ttagtagagggactaaa-tcaaaaacgcatatttacatagggacaaaattagaa---aacataatcatcaatttttgaaatttaaaac 302  Q
    |||||| |||||||||| |||||||||||| ||||||||||||| |||||| ||   ||| ||||| |||||||||||| ||||||||    
T  27160506 ttagtatagggactaaaatcaaaaacgcatttttacatagggactaaattaaaaaataacgtaatcttcaatttttgaattttaaaac 27160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 38756833 - 38756938
Alignment:
Q  196 acttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggac-aaaatt-agaaaacataatcatc-aatttttg 291  Q
    ||||||||||||  ||||||  |||||||||||||||||| | |||||| ||| ||||||||||||| |||||| | ||||| |||||||| ||||||||    
T  38756833 acttgatgagattgcaactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaaatttttg 38756932  T
Q  292 aaattt 297  Q
    ||||||    
T  38756933 aaattt 38756938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 30045945 - 30046061
Alignment:
Q  186 catacatggaacttgatgagatgacaactgaacttagtagagggact-aaatcaaaaacgcatatttacatagggacaaaatt-agaaaacataatcatc 283  Q
    ||||| ||| || ||||||| || ||||| | ||||||||||||||| ||| |||||||| || ||||||||||||| ||||| | |||| ||||| |||    
T  30045945 catacgtggcacatgatgagttgccaactaatcttagtagagggactaaaaccaaaaacgtatttttacatagggacgaaattaaaaaaatataataatc 30046044  T
Q  284 aatttttgaaatttaaa 300  Q
    || ||||| ||||||||    
T  30046045 aaattttggaatttaaa 30046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 30045812 - 30045899
Alignment:
Q  47 gtaagttaacacgtttttgattttagtctttgtatctttt-ttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    |||||||| | |||||||  ||| ||||  |||||||||| ||||||||||| ||| |||||||| | |||| |||||||||||||||    
T  30045812 gtaagttagcgcgttttttgtttaagtccatgtatctttttttgttgcgaaataactcttgtatttatttaaccttttgaaattggtc 30045899  T

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Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 172 - 322
Target Start/End: Complemental strand, 33489814 - 33489662
Alignment:
Q  172 gctggctaacg-acacatacatggaacttgatgagatgacaactgaacttagtagagggactaa-atcaaaaacgcatatttacatagggacaaaattag 269  Q
    ||||||||||| || ||||  ||| |||||||||| || ||||||  ||||||||||||||||| | ||||||||||| |||||||||||||  |||||     
T  33489814 gctggctaacggacgcatatgtggcacttgatgagttggcaactggtcttagtagagggactaataccaaaaacgcatttttacatagggacggaattaa 33489715  T
Q  270 aaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttc 322  Q
    |||||||||||||||| ||||||||||||||| |||||||||| | |||||||    
T  33489714 aaaacataatcatcaaattttgaaatttaaaattcattctttccaccttcttc 33489662  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 6535687 - 6535591
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt--gttgcgaaacaacccttgtattcacttaatcttttgaaattggt 132  Q
    |||||| ||||||||||| |  |||||| |||||||||  ||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||||    
T  6535687 aaaggtacatgtaagttagcg-gttttttattttagtccatgtatcttttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggt 6535591  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 33489935 - 33489849
Alignment:
Q  46 tgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattgg 131  Q
    ||||||||| | |||||||  ||||||||  |||||||||||| ||||||||||||||| |||||| ||||||  |||| |||||||    
T  33489935 tgtaagttagcgcgtttttcgttttagtccctgtatctttttttgttgcgaaacaacccctgtatttacttaactttttaaaattgg 33489849  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 35931186 - 35931119
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaatta--gaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||| ||||||||||||| ||||||   ||||| ||||| |||||||||||| ||||||||    
T  35931186 caaaaacgcatttttacatagggactaaattaagaaaaacgtaatcttcaatttttgaattttaaaac 35931119  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 35929726 - 35929814
Alignment:
Q  219 ttagtagagggactaaa-tcaaaaacgcatatttacatagggacaaaatt----agaaaacataatcatcaatttttgaaatttaaaac 302  Q
    |||||| |||||||||| |||||||||||| ||||||||| ||| |||||    | ||||| ||||| |||||||||||| ||||||||    
T  35929726 ttagtatagggactaaaatcaaaaacgcatttttacatagagactaaattaaaaaaaaaacgtaatcttcaatttttgaattttaaaac 35929814  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 3149276 - 3149550
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatctttttt-gttgcgaaacaacccttgtattcacttaatcttttgaaattggtctt 135  Q
    |||||| | ||||||||| |  ||||| | ||||||||  |||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||     
T  3149276 aaaggtccctgtaagttagccagttttgggttttagtccatgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttgaaattggtctc 3149375  T
Q  136 tgccctccgtttctatgaaagaaagnnnnnnncatagctggctaac-gacacatacatggaacttgatgagatgacaactgaacttagtagagggactaa 234  Q
    |||| ||  ||||  | ||| |||        ||| |||||||||| ||  ||||||||| || ||||||| || || |||  |||||||||||||||||    
T  3149376 tgccgtctatttccgtcaaaaaaa------cgcattgctggctaacagatgcatacatggcacatgatgagttggcagctggtcttagtagagggactaa 3149469  T
Q  235 atcaaaa-acgcatatttacatagggacaaaattagaaaa--cataatcatcaatttttgaaatttaaaactcattctttc 312  Q
    | | ||| |||||| ||||||||||||| |||||| ||||  |||||||||||| ||||| ||||||||| ||||||||||    
T  3149470 aaccaaagacgcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaatttaaaattcattctttc 3149550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 331
Target Start/End: Complemental strand, 27662510 - 27662364
Alignment:
Q  186 catacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaa-cataatcatc 283  Q
    |||| |||| ||||||||||||| ||| ||  |||||||||||||||||| | ||||||||||||||||| ||| || |||||| |||| |||||| |||    
T  27662510 catagatggtacttgatgagatggcaattggtcttagtagagggactaaaactaaaaacgcatatttacagagg-acgaaattaaaaaaacataattatc 27662412  T
Q  284 aatttttgaaatttaaaactcattctttctaacttcttcgtctctctg 331  Q
    || |||||||||||||||  | || |||| | ||||||| ||||||||    
T  27662411 aaattttgaaatttaaaatcctttatttccaccttcttcctctctctg 27662364  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 26537583 - 26537690
Alignment:
Q  196 acttgatgagatgacaactgaacttagtagagggactaaa-tcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaa 294  Q
    ||||||||||||||||| ||   ||||||||||||||||| |||||||| |||||||| ||| |||  |||||| ||||| |||||||||| ||||  ||    
T  26537583 acttgatgagatgacaattggtgttagtagagggactaaaatcaaaaacacatatttaaataaggatgaaattaaaaaacgtaatcatcaaattttacaa 26537682  T
Q  295 tttaaaac 302  Q
    ||||||||    
T  26537683 tttaaaac 26537690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 331
Target Start/End: Original strand, 27661303 - 27661433
Alignment:
Q  203 gagatgacaactgaacttagtagagggactaaatcaaa-aacgcatatttacatagggacaaaattaga-aaacataatcatcaatttttgaaatttaaa 300  Q
    |||||||||||||   ||||||||||||||||| |||| ||| |||||||||||||||   |||||| | |||  ||||||| || ||||||||||||||    
T  27661303 gagatgacaactggtgttagtagagggactaaaacaaataacacatatttacataggggtgaaattaaagaaatgtaatcataaaattttgaaatttaaa 27661402  T
Q  301 actcattctttctaacttcttcgtctctctg 331  Q
    |||||   |||| | ||||||||||||||||    
T  27661403 actcaaaatttccaccttcttcgtctctctg 27661433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 13645043 - 13645147
Alignment:
Q  219 ttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttctaact 317  Q
    ||||||||||||||||| | ||||||||| |||||||||||||| ||| || |||||||||| |||||  |||||||| |||||   |||||||| | ||    
T  13645043 ttagtagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataataatcaaaatttgaaatgtaaaatgtattctttccacct 13645142  T
Q  318 tcttc 322  Q
    |||||    
T  13645143 tcttc 13645147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 27661156 - 27661212
Alignment:
Q  83 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtctttgcc 139  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  27661156 ttttttgttgcgaaacaacctttgtatttacttaattttttgaaattggtctctgcc 27661212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 39870649 - 39870728
Alignment:
Q  223 tagagggactaaa-tcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaa 301  Q
    ||||||||||||| ||||||||| || ||||||||||||   ||||| ||||| |||||||||||||||||| |||||||    
T  39870649 tagagggactaaaatcaaaaacgtatttttacatagggatgtaattaaaaaacgtaatcatcaatttttgaattttaaaa 39870728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 1677177 - 1677257
Alignment:
Q  223 tagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaac 302  Q
    ||||||||||||| | ||||||||| |||||||||||||| ||| || ||||| ||||||||||  |||||| ||||||||    
T  1677177 tagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacgtaatcatcaaaatttgaattttaaaac 1677257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 3149918 - 3149788
Alignment:
Q  186 catacatggaacttgatgagatgacaactgaacttagtagagggactaaatc-aaaaacgcatatttacatagggac--aaaattagaaaacataatcat 282  Q
    ||||| ||| |||||||||||||||| |||  ||| |||||||||| ||| | |||||||||| |||||||||||||  ||| | | ||||| |||||||    
T  3149918 catacgtggcacttgatgagatgacagctgctcttggtagagggacaaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcat 3149819  T
Q  283 c-aatttttgaaatttaaaactcattctttc 312  Q
    | ||||||| |||||| |||| || ||||||    
T  3149818 caaatttttaaaattttaaacccaatctttc 3149788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 27662608 - 27662558
Alignment:
Q  83 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  27662608 ttttttgttgcaaaacaacccttgtatttacttaaccttttgaaagtggtc 27662558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 3150064 - 3149968
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgta-tcttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    |||||| | ||||||||||| |||||||| ||||||||  |||| | |||||||||||| || ||||||||||||  |||||  ||||||||||||||    
T  3150064 aaaggtccctgtaagttaacgcgtttttggttttagtccctgtatttttttttgttgcg-aataacccttgtattttcttaactttttgaaattggtc 3149968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 33552887 - 33552819
Alignment:
Q  233 aaatcaaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaa 301  Q
    ||||||||||  || ||||||||||||||||||||  ||||||||| ||||||  ||| ||||||||||    
T  33552887 aaatcaaaaatccaaatttacatagggacaaaattgaaaaacataaacatcaaaatttaaaatttaaaa 33552819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 13645348 - 13645242
Alignment:
Q  219 ttagtagagggactaaatca-aaaacgcatatttacatagggacaaa--attagaaaacataatcatcaatttttgaaatttaaaactcattctttctaa 315  Q
    ||||||||||||||||| |  |||||||| |||||||||||||  ||  |  | ||||||||||||||||  |||||||||||||||  |||||||| |     
T  13645348 ttagtagagggactaaaacctaaaacgcaaatttacatagggaagaagaaaaaaaaaacataatcatcaaaatttgaaatttaaaacatattctttccac 13645249  T
Q  316 cttcttc 322  Q
    |||||||    
T  13645248 cttcttc 13645242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 34595775 - 34595725
Alignment:
Q  83 ttttttgttgcgaaacaacccttgtattcacttaatcttttgaaattggtc 133  Q
    |||||||||||||||||||||||||||    |||| |||||||||||||||    
T  34595775 ttttttgttgcgaaacaacccttgtatcttgttaaccttttgaaattggtc 34595725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 26537428 - 26537501
Alignment:
Q  37 aaaggttcatgtaagttaacacgtttttgattttagtctttgtatcttttttg-ttgcgaaacaacccttgtat 109  Q
    |||||| ||| |||| || |||||||||| |||||||   ||||||||||||  ||||||||||||||||||||    
T  26537428 aaaggtccatataagctagcacgtttttggttttagttcctgtatctttttttattgcgaaacaacccttgtat 26537501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 34594455 - 34594515
Alignment:
Q  223 tagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcat 282  Q
    ||||||||||||| | ||||||| | |||||||||||||  |||||| |||||||||||||    
T  34594455 tagagggactaaaaccaaaaacggaaatttacatagggatgaaattaaaaaacataatcat 34594515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 55196611 - 55196670
Alignment:
Q  60 tttttgattttagtctttgtatctttt--ttgttgcgaaacaacccttgtattcacttaa 117  Q
    |||||| ||||||||  ||||||||||  ||||||||||||||||| |||||| ||||||    
T  55196611 tttttggttttagtccatgtatcttttttttgttgcgaaacaacccctgtatttacttaa 55196670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 7274501 - 7274416
Alignment:
Q  237 caaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactcattctttctaacttcttc 322  Q
    |||||| ||| |||||||||||||  ||| || ||||||||||||||||  |||||| ||||||||| ||| |||| | |||||||    
T  7274501 caaaaatgcaaatttacatagggatgaaaataaaaaacataatcatcaaaatttgaattttaaaacttattatttccaccttcttc 7274416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 25562821 - 25562756
Alignment:
Q  46 tgtaagttaacacgtttttgattttagtctttgt-atcttttttgttgcgaaacaacccttgtatt 110  Q
    ||||||||  |||||||||||||||||||  | | |  ||||||||||||||||||||||||||||    
T  25562821 tgtaagttcgcacgtttttgattttagtccctctaagtttttttgttgcgaaacaacccttgtatt 25562756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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