View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20364_low_18 (Length: 250)

Name: NF20364_low_18
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20364_low_18
NF20364_low_18
[»] chr4 (8 HSPs)
chr4 (20-250)||(23312358-23312588)
chr4 (98-142)||(50269866-50269910)
chr4 (89-143)||(31714349-31714403)
chr4 (88-134)||(31720192-31720238)
chr4 (92-141)||(24875735-24875784)
chr4 (109-142)||(46011638-46011671)
chr4 (90-138)||(30127671-30127719)
chr4 (94-142)||(36768850-36768898)
[»] chr7 (4 HSPs)
chr7 (92-149)||(38957341-38957399)
chr7 (88-138)||(24401843-24401893)
chr7 (89-142)||(21454236-21454289)
chr7 (104-141)||(31753773-31753810)
[»] chr8 (2 HSPs)
chr8 (88-145)||(25161232-25161289)
chr8 (88-141)||(15140361-15140414)
[»] chr5 (3 HSPs)
chr5 (86-137)||(29163393-29163444)
chr5 (89-138)||(19625927-19625976)
chr5 (98-147)||(42082085-42082134)
[»] chr6 (3 HSPs)
chr6 (94-140)||(6916744-6916790)
chr6 (96-141)||(3151385-3151430)
chr6 (90-142)||(18262780-18262833)
[»] chr2 (1 HSPs)
chr2 (88-142)||(32102855-32102909)
[»] chr3 (2 HSPs)
chr3 (89-149)||(8091408-8091468)
chr3 (103-151)||(26643288-26643336)
[»] chr1 (1 HSPs)
chr1 (89-121)||(32638460-32638492)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 23312588 - 23312358
Alignment:
Q  20 tgttgtttccaatgtagcatcgacattttagattgaaggcatgttcaacatatgttggtgtcggacattgacacgacactgacaaatgtgattacattca 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23312588 tgttgtttccaatgtagcatcaacattttagattgaaggcatgttcgacatatgttggtgtcggacattgacacgacactgacaaatgtgattacattca 23312489  T
Q  120 ataattcaattttctcaaattataaccagtatggtttcaacgtatcatcttcaaattataaccagtataggtggtttccttacaattttagagtttgata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23312488 ataattcaattttctcaaattataaccagtatggtttcaacgtatcatcttcaaattataaccagtataggtggtttccttacaattttagagtttgata 23312389  T
Q  220 ttgcgtttgcttagtcagaattttcctcaaa 250  Q
    |||||||||||||||||||||||||||||||    
T  23312388 ttgcgtttgcttagtcagaattttcctcaaa 23312358  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 50269910 - 50269866
Alignment:
Q  98 ctgacaaatgtgattacattcaataattcaattttctcaaattat 142  Q
    |||||| |||||  |||||||||||||||||||||||||||||||    
T  50269910 ctgacacatgtgggtacattcaataattcaattttctcaaattat 50269866  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 31714349 - 31714403
Alignment:
Q  89 gacacgacactgacaaatgtgattacattcaataattcaattttctcaaattata 143  Q
    ||||||||| ||||||||||||||||||||||| ||  ||||||||  |||||||    
T  31714349 gacacgacaatgacaaatgtgattacattcaattatgtaattttctataattata 31714403  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 31720192 - 31720238
Alignment:
Q  88 tgacacgacactgacaaatgtgattacattcaataattcaattttct 134  Q
    |||||||||| ||||||||||||||||||||||| ||  ||||||||    
T  31720192 tgacacgacaatgacaaatgtgattacattcaattatgtaattttct 31720238  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 24875784 - 24875735
Alignment:
Q  92 acgacactgacaaatgtgattacattcaataattcaattttctcaaatta 141  Q
    |||||||||| | ||||| ||||||||||| |||| ||||||||||||||    
T  24875784 acgacactgatacatgtggttacattcaattattctattttctcaaatta 24875735  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 46011638 - 46011671
Alignment:
Q  109 gattacattcaataattcaattttctcaaattat 142  Q
    |||||||||||||||||| |||||||||||||||    
T  46011638 gattacattcaataattctattttctcaaattat 46011671  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 30127671 - 30127719
Alignment:
Q  90 acacgacactgacaaatgtgattacattcaataattcaattttctcaaa 138  Q
    |||||||| ||||| ||||| |||||||||||||||  |||||||||||    
T  30127671 acacgacattgacacatgtggttacattcaataatttcattttctcaaa 30127719  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 36768850 - 36768898
Alignment:
Q  94 gacactgacaaatgtgattacattcaataattcaattttctcaaattat 142  Q
    |||||||||| ||||||||||||||||| | | |||| |||||||||||    
T  36768850 gacactgacacatgtgattacattcaattaattaattctctcaaattat 36768898  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 38957341 - 38957399
Alignment:
Q  92 acgacactgacaaatgtgattacattcaa-taattcaattttctcaaattataaccagt 149  Q
    |||||||||||| |||||||||||||||| ||||| | |||||||||||||| ||||||    
T  38957341 acgacactgacacatgtgattacattcaattaatttatttttctcaaattatcaccagt 38957399  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 24401893 - 24401843
Alignment:
Q  88 tgacacgacactgacaaatgtgattacattcaataattcaattttctcaaa 138  Q
    |||||||| ||||||| ||||||||||||||||| | || |||||||||||    
T  24401893 tgacacgaaactgacacatgtgattacattcaattaatccattttctcaaa 24401843  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 21454236 - 21454289
Alignment:
Q  89 gacacgacactgacaaatgtgattacattcaataattcaattttctcaaattat 142  Q
    ||||||||||||| | ||||| ||||||||||||| || ||||| |||||||||    
T  21454236 gacacgacactgagacatgtggttacattcaataaatccattttttcaaattat 21454289  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 31753773 - 31753810
Alignment:
Q  104 aatgtgattacattcaataattcaattttctcaaatta 141  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  31753773 aatgtgattacattcaattatttaattttctcaaatta 31753810  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 25161289 - 25161232
Alignment:
Q  88 tgacacgacactgacaaatgtgattacattcaataattcaattttctcaaattataac 145  Q
    |||||||||||||||| ||||||| ||||||||| || | ||||| ||||||||||||    
T  25161289 tgacacgacactgacacatgtgatgacattcaattataccattttttcaaattataac 25161232  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 15140361 - 15140414
Alignment:
Q  88 tgacacgacactgacaaatgtgattacattcaataattcaattttctcaaatta 141  Q
    ||||||||||| ||||  |||| ||||||||||| |||||| ||||||||||||    
T  15140361 tgacacgacaccgacacgtgtggttacattcaattattcaaatttctcaaatta 15140414  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 29163444 - 29163393
Alignment:
Q  86 attgacacgacactgacaaatgtgattacattcaataattcaattttctcaa 137  Q
    ||||||| ||||| |||| ||||||||||||| ||||||| |||||||||||    
T  29163444 attgacaagacacggacacatgtgattacatttaataatttaattttctcaa 29163393  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 19625927 - 19625976
Alignment:
Q  89 gacacgacactgacaaatgtgattacattcaataattcaattttctcaaa 138  Q
    ||||| ||||||||| ||||| ||||||||||| |||| |||||||||||    
T  19625927 gacacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 42082085 - 42082134
Alignment:
Q  98 ctgacaaatgtgattacattcaataattcaattttctcaaattataacca 147  Q
    |||||| ||||| |||| |||||||| |||||||| ||||||||||||||    
T  42082085 ctgacacatgtggttactttcaataaatcaattttttcaaattataacca 42082134  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 6916790 - 6916744
Alignment:
Q  94 gacactgacaaatgtgattacattcaataattcaattttctcaaatt 140  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||||||||    
T  6916790 gacattgacacatgtggttacattcaattattcaattttctcaaatt 6916744  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 3151385 - 3151430
Alignment:
Q  96 cactgacaaatgtgattacattcaataattcaattttctcaaatta 141  Q
    |||| ||| |||||||||||||||| ||||| ||||||||||||||    
T  3151385 cactaacacatgtgattacattcaacaattccattttctcaaatta 3151430  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 18262780 - 18262833
Alignment:
Q  90 acacgacactgacaaatgtgattacattcaat-aattcaattttctcaaattat 142  Q
    |||| ||||||||| |||||||||| |||||| ||||||||||| |||||||||    
T  18262780 acacaacactgacacatgtgattactttcaattaattcaattttatcaaattat 18262833  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 32102855 - 32102909
Alignment:
Q  88 tgacacgacactgacaaatgtgattacattcaataattcaattttctcaaattat 142  Q
    ||||| |||||||||||||||||||| ||||||| | |  |||||||||||||||    
T  32102855 tgacatgacactgacaaatgtgattatattcaattaatttattttctcaaattat 32102909  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 8091408 - 8091468
Alignment:
Q  89 gacacgacactgacaaatgtgattacattcaataattcaattttctcaaattataaccagt 149  Q
    |||||||||  |||| |||| ||||||||||||||| | ||||||| ||||||| ||||||    
T  8091408 gacacgacatcgacacatgtaattacattcaataatcctattttcttaaattattaccagt 8091468  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 26643288 - 26643336
Alignment:
Q  103 aaatgtgattacattcaataattcaattttctcaaattataaccagtat 151  Q
    ||||||| ||||||||||| |||| ||||||| ||||||| ||||||||    
T  26643288 aaatgtggttacattcaattattctattttcttaaattattaccagtat 26643336  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 32638492 - 32638460
Alignment:
Q  89 gacacgacactgacaaatgtgattacattcaat 121  Q
    ||||||||||||||| |||||||||||||||||    
T  32638492 gacacgacactgacacatgtgattacattcaat 32638460  T

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