View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_2 (Length: 675)
Name: NF20364_low_2
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 361 - 660
Target Start/End: Complemental strand, 32959561 - 32959255
Alignment:
| Q |
361 |
caatttaatacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcaaaatca------cagtgagtc |
454 |
Q |
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| T |
32959561 |
caatttaatacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcagaatcagaatcacagtgagtc |
32959462 |
T |
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| Q |
455 |
gtcgtaatttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaactcgtggtgattcttatcaagcacttagac |
554 |
Q |
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| T |
32959461 |
gtcgtaatttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaactcgcggtgattcttatcaagtacttagac |
32959362 |
T |
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| Q |
555 |
atagacaagtgaaagatg-gagaaaagtagaagtgtgattggatgtagaagagagttgaaaaaagcatacagcatcaaatgaactctgccagtagttaga |
653 |
Q |
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| T |
32959361 |
atagacaagtgaaagatgagagagaagtagaagtgtgattggatgtagaagagagttgaaaaaagcatacagcatcaaatgaactctgccagtagttaga |
32959262 |
T |
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| Q |
654 |
gatattg |
660 |
Q |
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||||||| |
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| T |
32959261 |
gatattg |
32959255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 32959897 - 32959587
Alignment:
| Q |
12 |
aagaaggagaaaaaatatgatagaaatgtacttacaatcttgcatgaaccaagttgaagaagaccatgtccagcttgaattacagctatggtctgctcat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32959897 |
aagaaggagaaaaaatatgatagaaatgtacttacaatcttgcatgaaccaagttgaagaagaccatgtccagcttgaattacagctatggtctgctcat |
32959798 |
T |
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| Q |
112 |
ggaaacaaataaaatgagttgaaaaatcttaagaaatcaattaatccttgtgagaccaataataatagc--nnnnnnnnnnnnnnnnnnccaaagcttgt |
209 |
Q |
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| T |
32959797 |
ggaaacaaataaaatgagttgaaaaatcttaagaaatcaattaatccttgtgagaccaataataatagcaaaaaaataaaaaaataaaaccaaagcttgt |
32959698 |
T |
|
| Q |
210 |
aataatgattctgttttctgacctgaatgcctgattcaaattggtcagtccattcaggaggaagctgcaattaataccaaaagaggatgaaatcaatcat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32959697 |
aataatgattctgttttctgacctgaatgcctgattcaaactggtcagtccattcaggaggaagctgcaattaataccaaaagaggatgaaatcaatcat |
32959598 |
T |
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| Q |
310 |
catcaaaataa |
320 |
Q |
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||||| ||||| |
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| T |
32959597 |
catcataataa |
32959587 |
T |
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