View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_20 (Length: 239)
Name: NF20364_low_20
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36162716 - 36162495
Alignment:
| Q |
1 |
agttgactgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttatagatgagaaatttgt |
100 |
Q |
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| T |
36162716 |
agttgactgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttataaatgagaaatttgt |
36162617 |
T |
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| Q |
101 |
tggaagaggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaagtgtgctaagtggaagcaaatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36162616 |
tggaagaggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaagtgtgctaagtggaagcacatct |
36162517 |
T |
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| Q |
201 |
acagttgaagatgctcttgtag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36162516 |
acagttgaagatgctcttgtag |
36162495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 36156677 - 36156462
Alignment:
| Q |
9 |
gaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttatagatgagaaatttgttggaagag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
36156677 |
gaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtgggaaaaatctatgaacattgatgtcttcatcaatgagaaatttgttggaagag |
36156578 |
T |
|
| Q |
109 |
gcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaagtgtgctaagtggaagcaaatctacagttga |
208 |
Q |
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| T |
36156577 |
gcacttatggctctaagaaagacattgcacattatagagctgcaaaaaatgctttggataatatagaaagggtgctaagtggaagcacatctatagttga |
36156478 |
T |
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| Q |
209 |
agatgctcttgtagat |
224 |
Q |
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|||||||||||||||| |
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| T |
36156477 |
agatgctcttgtagat |
36156462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 36146801 - 36146632
Alignment:
| Q |
8 |
tgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttatagatgagaaatttgttggaaga |
107 |
Q |
| |
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|||||||||||| ||||||| | || ||||||||| ||| ||||||||||| |||||| ||||| ||| ||||| ||||| | ||||||||||| |
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| T |
36146801 |
tgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagaattgaagtccttataaatgaggagtttgttggaagt |
36146702 |
T |
|
| Q |
108 |
ggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaa |
177 |
Q |
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|| |||||||||||||||||| ||||||| |||| || ||||| ||||||||| | ||||| |||| |
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| T |
36146701 |
ggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa |
36146632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 26525828 - 26525989
Alignment:
| Q |
8 |
tgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttatagatgagaaatttgttggaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||| || |||| ||||||||||||||||| || |||||||||||||||||||| |
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| T |
26525828 |
tgaagtttgtcagaagaaaaaatttaatttacaatttgtagacttgtgggaaaaatcaatgaacattgatgtcttcatcaatgagaaatttgttggaaga |
26525927 |
T |
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| Q |
108 |
ggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataa |
169 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||| |
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| T |
26525928 |
ggcacttatggctctaagaaagacattgtacattatagagctgcaaaaaatgctttggataa |
26525989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 26530221 - 26530390
Alignment:
| Q |
8 |
tgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttatagatgagaaatttgttggaaga |
107 |
Q |
| |
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|||||||||||| || |||| | | || ||||||||| ||| ||||||||||| ||||||| |||| ||| ||||| ||||| | ||||||||||| |
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| T |
26530221 |
tgaagtttgtcacaataaaagactcaagttacaattcagagatttgtggaaagagtctatgagagttgaagtccttataaatgaggagtttgttggaagt |
26530320 |
T |
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| Q |
108 |
ggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaa |
177 |
Q |
| |
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|| |||||| ||||||||||| |||||||| |||| || ||||| |||| |||| | ||||| |||| |
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| T |
26530321 |
ggtgtttatggttctaagaaagaaattgcacgcaatagggcagcaaaaaatgttttgcaaaatatggaaa |
26530390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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