View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_3 (Length: 657)
Name: NF20364_low_3
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 38927465 - 38926827
Alignment:
| Q |
1 |
cgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcatc |
100 |
Q |
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| T |
38927465 |
cgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcatc |
38927366 |
T |
|
| Q |
101 |
aaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38927365 |
aaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaatat |
38927266 |
T |
|
| Q |
201 |
tggatgtggagtgatgagtacatgtttcatgcaagcattagtggaccgcaaggaaaagccggttgaaattctgaagatcacagctattggattttctaac |
300 |
Q |
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| T |
38927265 |
tggatgtggagtgatgagtacatgtttcatgcaagcattagtagaccgcaaggaaaagccggttgaaattctgaagatcacagctattggattttctaac |
38927166 |
T |
|
| Q |
301 |
aaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataacatagtttttgttgaggatgctatgg |
400 |
Q |
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| T |
38927165 |
aaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataacatagtttttgttgaggatgctatgg |
38927066 |
T |
|
| Q |
401 |
agattaagttagatcaatttgacattgaatatgatgaagctgttgctatttactctccatgttcacttaggactatggtatcaaattctgatgggttgga |
500 |
Q |
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| T |
38927065 |
agattaagttagatcaatttgacattgaatatgatgaagctgttgctatttactctccatgttcacttaggactatggtatcaaattctgatggcttgga |
38926966 |
T |
|
| Q |
501 |
gaatttgatgaaggtgataagaaaaatgaagccgtttattatgatagtacttgaactggaagcaaaccataattcacctttgtttgcgaataggtttgtt |
600 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38926965 |
gaatttgatgaaggtgataagaaaaatgaaaccgtttattatgatagtacttgaacttgaagcaaaccataattcacctttgtttgcgaataggtttgtt |
38926866 |
T |
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| Q |
601 |
gaagcattgttcttttactcagcattttttgactgtgtt |
639 |
Q |
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| T |
38926865 |
gaagcattgttcttttactcagcattttttgactgtgtt |
38926827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 44837896 - 44837828
Alignment:
| Q |
94 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgtt |
162 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||| ||||||||| |
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| T |
44837896 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacatgtt |
44837828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 44837674 - 44837613
Alignment:
| Q |
313 |
gaagaaattggcaaaagtttaatgagttttgctgaatccttgaacataccctttttatataa |
374 |
Q |
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||||||| |||||||| |||| |||||||||||||| |||||| | |||||||||||||| |
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| T |
44837674 |
gaagaaactggcaaaaatttagctagttttgctgaatcattgaacttgccctttttatataa |
44837613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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