View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_4 (Length: 642)
Name: NF20364_low_4
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 292 - 637
Target Start/End: Original strand, 2697739 - 2698085
Alignment:
| Q |
292 |
aagaactgtaaaattgattttgacatgtttgggtgttatcaaggggtgtgggagctaaactagtgtattgaagctccttccgtccctgaccttgcatttg |
391 |
Q |
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| T |
2697739 |
aagaactgtaaaattgattttgacatgtttgggtgttatcaaggggtgtgggagctgaactagtgtagtgaagctccctccgtccctgaccttgcatttg |
2697838 |
T |
|
| Q |
392 |
gcccaaacatgtgttaaactc-aactgtttgttttgggggtgactagtggtgcggggcgatagccctcgcggtagtattgttgtaatctgaaccgcaata |
490 |
Q |
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| T |
2697839 |
gcccaaacatgtgttaaactccaactgtttgttttgggggtgactagtggtgcggggcgatagccctcgcggtagtattgttgtaatctgaaccgcaata |
2697938 |
T |
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| Q |
491 |
tgatatatatccttgtaacactgtaaaccctaatatacgacactacggttgctttatagttggagaggtagacatacttggctgaagtatgtaaagaaac |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2697939 |
tgatatatatccttgtaacactgtaaaccctaatatacgacactacggttgctttatagttggagaggtagacatacttggctgaagtatgtaaagaaac |
2698038 |
T |
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| Q |
591 |
aatcgtgttccattatttgtgatttgtgtttctttattcttctctct |
637 |
Q |
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| T |
2698039 |
aatcgtgttccattatttgtgatttgtgtttctttattcttctctct |
2698085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 2697456 - 2697654
Alignment:
| Q |
10 |
gaaatggtggtggtgatggtggaaaagatggnnnnnnnactgaaaaggagaatatccagttggaaaatgaggatacccagatggaaaattctgatgaaga |
109 |
Q |
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| T |
2697456 |
gaaatggtggtggtgatggtggaaaagatggtttttttactgaaaaggagaatacccagttggaaaatgaggatacccagatggaaaattctgatgaaga |
2697555 |
T |
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| Q |
110 |
aaatggggatgatgatcttgaacttgaagaaagacttccttctcttggtgatggtttctatgagattgaagctattcgtcgtaagagataccgcaaggt |
208 |
Q |
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| T |
2697556 |
aaatggggatgatgatcttgaacttgaagaaagacttccttctcttggtgatggtttctatgagattgaagctattcgtcgtaagagataccgcaaggt |
2697654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 582 - 633
Target Start/End: Complemental strand, 14072032 - 14071981
Alignment:
| Q |
582 |
taaagaaacaatcgtgttccattatttgtgatttgtgtttctttattcttct |
633 |
Q |
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| T |
14072032 |
taaagaaacgatcatgttccattttttgcgatttatgtttctttattcttct |
14071981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 582 - 633
Target Start/End: Original strand, 17476211 - 17476262
Alignment:
| Q |
582 |
taaagaaacaatcgtgttccattatttgtgatttgtgtttctttattcttct |
633 |
Q |
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|||| ||||||| |||||||||| |||| |||||| |||||||||||||||| |
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| T |
17476211 |
taaacaaacaattgtgttccattgtttgcgatttgcgtttctttattcttct |
17476262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 28820799 - 28820839
Alignment:
| Q |
581 |
gtaaagaaacaatcgtgttccattatttgtgatttgtgttt |
621 |
Q |
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| T |
28820799 |
gtaaacaaacgatcgtgttccattgtttgtgatttgtgttt |
28820839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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