View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_5 (Length: 640)
Name: NF20364_low_5
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 119 - 623
Target Start/End: Original strand, 8041248 - 8041753
Alignment:
| Q |
119 |
aagactaaggcatgagttgataaatagggagtaattatttgagaatataagcttgaaatgcatctatttcaaataaaaagagcatatttataatactact |
218 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8041248 |
aagactaag-catgagttgacaaatagggagtaattatttgagaatataagcttgaaatgcacctatttcaaataaaaagagcatatttataatactact |
8041346 |
T |
|
| Q |
219 |
c--agtttaaagttnnnnnnngaagctaaatttttgtatgacataattgccaaagaaatcagtcatcaaggcacgagcatgaggaataatctcaggaaat |
316 |
Q |
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| T |
8041347 |
cccagtttaaagttaaaaatagaagctaaatttttgtatgacataattgccaaagaaatcagtcatcaaggcacgagcatgaggaataatcttaggaaat |
8041446 |
T |
|
| Q |
317 |
atcttggtcttctcttctaccgaagttgtttctaatttactgcattatagcatagattatcgatttagatttccaaagccatgccactagaaacaacatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8041447 |
atcttggtcttctcttctaccgaagttgtttctaatttactgcattatagcatagattatcgatttagatttccaaagccatgccactagaaacaacatt |
8041546 |
T |
|
| Q |
417 |
ggaggttcaaaatcatacctgaactgatgatcagtgatatctgaaaagttcaaaaggttttgttttgttgttcttgaactcatcgagcaagtctccatgt |
516 |
Q |
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| T |
8041547 |
ggaggttcaaaatcatatatgaactgatgatcagtgatatctgaaaagttcaaaaggtttggttttgttgttcttgaactcatcgagcaagtctccatgt |
8041646 |
T |
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| Q |
517 |
tattgccaatatcagcatgccatgagctcccagaacctcccatagaacttctcatcgtagaatttatgtgtcagattcgttcattctcaaacagaggatt |
616 |
Q |
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| T |
8041647 |
tattgtcaatatcagcatgccatgagctgccagaacctcccatagaacttctcatcgtagaatttatgtgtgagattcgttcattctcaaacagaggatt |
8041746 |
T |
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| Q |
617 |
tccgaat |
623 |
Q |
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||||||| |
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| T |
8041747 |
tccgaat |
8041753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 8040741 - 8040820
Alignment:
| Q |
8 |
gagcagagagtgcaacaacttgcccataaaaagatgtgatgataaactgaattctatcctaagggacacattctatacac |
87 |
Q |
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| T |
8040741 |
gagcagagagtgcaacaacttgcccataaaaagatgtgatgataaactgaattctatcctaagggacacattctgtacac |
8040820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 354 - 619
Target Start/End: Complemental strand, 42527618 - 42527332
Alignment:
| Q |
354 |
tactgcattatagcatagattatcgatttagatttccaaagccatgccactagaaacaacattggaggttcaaaatcatacctgaactg------atgat |
447 |
Q |
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||||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |
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| T |
42527618 |
tactgcattatagcacagattatcgattcagacttccaaagacatgccactagaaacaatagtggaggttcaaaatcatacctgaactgtaccacatgat |
42527519 |
T |
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| Q |
448 |
cagtgatatctgaaaagttcaaaaggttttgttttgttgttcttgaactcatcgagcaag----------------tctccatgttattgccaatatcag |
531 |
Q |
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|| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42527518 |
caatgatatctgaaa-gttcaaaaggtttggttttgttgttcttgaactcatcgagcaaggatgaagcaaatctactctccatgttattgccaatatcag |
42527420 |
T |
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| Q |
532 |
catgccatgagctcccagaacctcccatagaacttctcatcgtagaatttatgtgtcagattcgttcattctcaaacagaggatttcc |
619 |
Q |
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| T |
42527419 |
catgccatgagctgccagaccctcccagagaacttctcatcatagaatttatgtgtgagatttgttcattctcaaacagtggatttcc |
42527332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 42527754 - 42527651
Alignment:
| Q |
251 |
tgtatgacataattgccaaagaaatcagtcatcaaggcacgagcatgaggaataatctcaggaaatatcttggtcttctcttctaccgaagttgtttcta |
350 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42527754 |
tgtatgacataattgccaaagacatccgtcatcaaggcacgggcatgaggaagaatctcaggaaatatcttggtcttctcttctaccgaagctgtttcta |
42527655 |
T |
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| Q |
351 |
attt |
354 |
Q |
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|||| |
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| T |
42527654 |
attt |
42527651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 42528610 - 42528526
Alignment:
| Q |
3 |
aggaggagcagagagtgcaacaacttgcccataaaaagatgtgatgataaactgaattctatcctaagggacacattctatacac |
87 |
Q |
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| T |
42528610 |
aggatgagtagaaagtgcaacaacttgcccataaaaagacgtgatgataaactgaattctattctgagggacagactctatacac |
42528526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 42528048 - 42527975
Alignment:
| Q |
104 |
aagataacagattttaagactaaggcatgagttgataaatagggagtaattatttgagaatataagcttgaaatgca |
180 |
Q |
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|||||| |||||||||||| | ||||||||||||| ||||| ||| |||| ||||||||||||||| ||||||| |
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| T |
42528048 |
aagatatcagattttaagagttaggcatgagttgacgaatagcgag---ttatctgagaatataagcttaaaatgca |
42527975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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