View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_8 (Length: 477)
Name: NF20364_low_8
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 3075461 - 3075083
Alignment:
| Q |
11 |
cacagagaagagaaagaagtaccgttataagagggaactcgttccagaaccgattctgctttgactatgagaagaatgaatatatggcaacaaaacttga |
110 |
Q |
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| T |
3075461 |
cacagagaagagaaagaagtaccgttataagagggaactcgttccagaaccgattctgctttgactatgagaagaatgaatatatggcaacaaaacttga |
3075362 |
T |
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| Q |
111 |
agaatctgcaaacaagtggaaacttgttgctgcgcctgctctaatgacaatatgttttgttcttttgcttttcatcccaatgcagtggttatactcgatt |
210 |
Q |
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| T |
3075361 |
agaatctgcaaacaagtggaaacttgttgctgcgcctgctctaatgacaatatgttttgttcttttgcttttcatcccaatgcagtggttatactcgatt |
3075262 |
T |
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| Q |
211 |
gttttatattatatatcaaatctttctgttttatacaatgtttatagttttgtctgttctaaattgcaatgaattttaggctataatgacggtgaagcac |
310 |
Q |
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| T |
3075261 |
gttttatattatatatcaaatctttctgttttatacaatgtttatagttttgtctgttctaaattgcaatgaattttaggctataatgacggtgaagcac |
3075162 |
T |
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| Q |
311 |
tggtcgactctgaatccaggatcaacatcagtcggaaaaccagcttttcatccaactaatgttacattgagaggcatat |
389 |
Q |
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| T |
3075161 |
tggtcgactctgaatccaggatcaacatcagtcggaaaacaagcttttcatccaactactgttacattgagaggcatat |
3075083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 3074908 - 3074832
Alignment:
| Q |
385 |
catatcatgtgagtaagtctttatcaaaggttgcctggatatatttcttcgtagtcagtgctctgatgcatgttctg |
461 |
Q |
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| T |
3074908 |
catatcatgtgagtaagtctttatcaaaggttgcctggatatatttcttcgtagtcagtgctctgatgcatgttctg |
3074832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 21157055 - 21156967
Alignment:
| Q |
318 |
ctctgaatccaggatcaacatcagtcggaaaaccagcttttcatccaactaatgttacattgagaggcatatcatgtgagtaagtcttt |
406 |
Q |
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| T |
21157055 |
ctctgaatccaggatcaacatcaatcggaaaaccagcttttcatccaactactgttgcattgaaaggcatatcatgtgaataggtcttt |
21156967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 21156781 - 21156725
Alignment:
| Q |
404 |
tttatcaaaggttgcctggatatatttcttcgtagtcagtgctctgatgcatgttct |
460 |
Q |
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| T |
21156781 |
tttatcaaaggttgcctggatatatttcttggtagtcagggctctgatgcatgttct |
21156725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 21157525 - 21157475
Alignment:
| Q |
36 |
tataagagggaactcgttccagaaccgattctgctttgactatgagaagaa |
86 |
Q |
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| T |
21157525 |
tataagagggaactcactccagaaccgattccgcttcgactatgagaagaa |
21157475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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