View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20364_low_9 (Length: 456)
Name: NF20364_low_9
Description: NF20364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20364_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 2372257 - 2372700
Alignment:
| Q |
1 |
cattggaaagtgatgagaaagtgaaagaattttcaatggggttgattgaggcaaaaacttggtctaatatgattgaagaaaagttaacaaaagttgttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2372257 |
cattggaaagtgatgagaaagtgaaagaattttcaatggggttgattgaggcaaaaacttggtctaacatgattgaagaaaagttaacaaaagttgttcc |
2372356 |
T |
|
| Q |
101 |
taagacaccaacaagaacaccacctggtgaaccagaaacaatcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaat |
200 |
Q |
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| T |
2372357 |
taagacaccaacaagaacaccacctggtgaaccagaaacaatcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaat |
2372456 |
T |
|
| Q |
201 |
cacttcaaaagcttttcttttgatgtcaatggtggtggtgaaggtgttgatcctcctaaaccaatgtggcttcaaattactgaggaagaatcaaagctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372457 |
cacttcaaaagcttttcttttgatgtcaatggtggtggtgaaggtgttgatcctccaaaaccaatgtggcttcaaattactgaggaagaatcaaagctca |
2372556 |
T |
|
| Q |
301 |
accaggttgattttgatcctgaagtgatttcatcgtttcgaaaatccttacaagaacaatctcaagatagtcttttttaccttaaacaaacatcaattga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2372557 |
accaggttgattttgatcctgaagtgatttcatcgtttcgaaaatccttacaagaacaatctcaagatagtcctttttaccttaaacaaacatcaattga |
2372656 |
T |
|
| Q |
401 |
tgaagaggaaatgaaagatgatgttttcgttgatgttaagattg |
444 |
Q |
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| T |
2372657 |
tgaagaggaaatgaaagatgatgtttttgtagatgttaagattg |
2372700 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 3376877 - 3376967
Alignment:
| Q |
141 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtcaatg |
231 |
Q |
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||||||||||||||| |||||||||| |||||||||| |||||||||| ||| || ||||| || | ||| || ||||||||||| |||| |
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| T |
3376877 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgatgttaatg |
3376967 |
T |
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