View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20365_high_1 (Length: 801)
Name: NF20365_high_1
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 35745174 - 35744796
Alignment:
| Q |
18 |
atgagaacactgaatgatctacaaaggctatatccagagatcataacaaaaactcaactgtcaaagattgaggacaagtctattgatcaggtaattatag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745174 |
atgagaacactgaatgatctacaaaggctatatccagagatcataacaaaaactcaagtgtcaaagattgaggacaagtctattgatcaggtaattatag |
35745075 |
T |
|
| Q |
118 |
tttcaacattaaataagctgcacctgaaatgaaattattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttatttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745074 |
tttcaacattaaataagctgcacctgaaatgaaattattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttatttt |
35744975 |
T |
|
| Q |
218 |
atactaggctgtggcctacttctgtgaggctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttcca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744974 |
atactaggctgtggcctacttctgtgaggctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttcca |
35744875 |
T |
|
| Q |
318 |
acatgcaaggatgacaacaacatgcgtcaattgggtatgttactaatgatcttagatatgcatcaacaatgtaaaaacttctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35744874 |
acatgcaaggatgacaacaacatgcgtcaattgggtatgttattaatgatct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 444 - 790
Target Start/End: Complemental strand, 35744757 - 35744411
Alignment:
| Q |
444 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744757 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
35744658 |
T |
|
| Q |
544 |
tgcgttgcatgggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
643 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744657 |
tgcgttgcattggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
35744558 |
T |
|
| Q |
644 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744557 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
35744458 |
T |
|
| Q |
744 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744457 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
35744411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University