View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20365_high_17 (Length: 388)
Name: NF20365_high_17
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 14843486 - 14843851
Alignment:
| Q |
1 |
agtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgtgcagcaaaagaattggtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14843486 |
agtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgtgcagcaaaagaattggtta |
14843585 |
T |
|
| Q |
101 |
ctaaactaatgactcagctctaacagctggaggaatcaatttgtcattttcccatgtatttcccggatcaacaaattagaattatcaacaatatgtttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14843586 |
ctaaactaatgactcagctctaacagctggaggaatcaatttgtcattttcccatgtatttcccggatcaacaaattagaattatcaacaatatgtttac |
14843685 |
T |
|
| Q |
201 |
ttctataaactatatcacgacataattcatgtttaggggctggtgttagtgatcttaattgaaaaagaggatcttttataacactgctactatacgactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14843686 |
ttctataaactatatcacgacataattcatgtttaggggctggtgttagtgatcttaattgaaaaagaggatcttttataacactgctactatacgactc |
14843785 |
T |
|
| Q |
301 |
tcttgccggctgaacatgcttccaccagaaatcagaaagtgctattttcattacatcccaatactc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14843786 |
tcttgccggctgaacatgcttccaccagaaatcagaaagtgctattttcattacatcccaatactc |
14843851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 37517329 - 37517694
Alignment:
| Q |
1 |
agtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgtgcagcaaaagaattggtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37517329 |
agtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgtgcagcaaaagaattggtta |
37517428 |
T |
|
| Q |
101 |
ctaaactaatgactcagctctaacagctggaggaatcaatttgtcattttcccatgtatttcccggatcaacaaattagaattatcaacaatatgtttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37517429 |
ctaaactaatgactcagctctaacagctggaggaatcaatttgtcattttcccatgtatttcccggatcaacaaattagaattatcaacaatatgtttac |
37517528 |
T |
|
| Q |
201 |
ttctataaactatatcacgacataattcatgtttaggggctggtgttagtgatcttaattgaaaaagaggatcttttataacactgctactatacgactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37517529 |
ttctataaactatatcacgacataattcatgtttaggggctggtgttagtgatcttaattgaaaaagaggatcttttataacactgctactatacgactc |
37517628 |
T |
|
| Q |
301 |
tcttgccggctgaacatgcttccaccagaaatcagaaagtgctattttcattacatcccaatactc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37517629 |
tcttgccggctgaacatgcttccaccagaaatcagaaagtgctattttcattacatcccaatactc |
37517694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University