View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_high_2 (Length: 775)

Name: NF20365_high_2
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_high_2
NF20365_high_2
[»] chr4 (5 HSPs)
chr4 (25-317)||(13075514-13075806)
chr4 (563-761)||(13076009-13076202)
chr4 (56-431)||(15860160-15860529)
chr4 (357-428)||(13075805-13075875)
chr4 (49-97)||(15860238-15860286)
[»] chr3 (7 HSPs)
chr3 (25-317)||(13538632-13538924)
chr3 (18-317)||(13404294-13404594)
chr3 (563-761)||(13538234-13538427)
chr3 (563-748)||(13404801-13404981)
chr3 (357-431)||(13404593-13404667)
chr3 (357-428)||(13538563-13538633)
chr3 (731-761)||(13404984-13405014)
[»] chr2 (6 HSPs)
chr2 (25-317)||(12826362-12826654)
chr2 (563-761)||(12825966-12826159)
chr2 (18-113)||(25143328-25143423)
chr2 (357-428)||(12826293-12826363)
chr2 (671-763)||(12817823-12817916)
chr2 (710-749)||(34331371-34331410)
[»] chr7 (5 HSPs)
chr7 (56-431)||(3395203-3395572)
chr7 (49-97)||(3395281-3395329)
chr7 (710-740)||(31924419-31924449)
chr7 (715-748)||(3150531-3150564)
chr7 (710-747)||(7999124-7999161)
[»] chr6 (2 HSPs)
chr6 (675-710)||(7250994-7251029)
chr6 (676-712)||(15109598-15109634)
[»] chr8 (1 HSPs)
chr8 (678-710)||(11815822-11815854)
[»] chr5 (1 HSPs)
chr5 (707-740)||(41542504-41542537)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 13075514 - 13075806
Alignment:
Q  25 tctcacctccatagtttcttccttccaacagctcacc-tccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaattcatccttc 123  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  13075514 tctcacctccat-gtttcttccttccaacagctcaccctccatcaattcttcttattcttaatttcaaaccctgttatcaacaaccccaattcatccttc 13075612  T
Q  124 tcctcaattaccaacagttcatttccatcaatttctcttattcccaattccaaaccctaattccaatttcgggttacaaagacacaccaaataccaattg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  13075613 tcctcaattaccaacagttcacttccatcaatttctcttattcccaatttcaaaccctaattccaattttgggttacaaagacaaaccaaatactaattg 13075712  T
Q  224 gagattctttgtaaaaaatattaggtaatttaatgtttattaatttcaacnnnnnnnnccttcatgttttttgttgctaaatttcttatgtgaa 317  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||    
T  13075713 gagattctttgtaaaaaatattaggtaatttaatgtttatcaatttcaaatttttttttcttcatgttttttgttgctaaatttcttatgtgaa 13075806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 563 - 761
Target Start/End: Original strand, 13076009 - 13076202
Alignment:
Q  563 gttgagttcattagatgataccctaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaataattgcat 662  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13076009 gttgagttcattagatgataccttaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaatgattgcat 13076108  T
Q  663 tcaattatattgtttcattttctcaaattattattggtgtcaacgtgttttcttaaattattatcggtgtcaacgtgttagtgttgtatcgtgtctgtg 761  Q
    |||     |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13076109 tca-----attgtttcattttctcaaattattattgatgtcaacgtattttcttaaattattatcggcgtcaacgtgttagtgttgtatcgtgtctgtg 13076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 56 - 431
Target Start/End: Original strand, 15860160 - 15860529
Alignment:
Q  56 ctcacctccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaattcatccttctcctcaattaccaacagttcatttccatcaat 155  Q
    |||||||  |||||||| || ||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||  |||||||||    
T  15860160 ctcacctatatcaattcctcctatacccaattccaaaccctattaccaacagccccatttcatccttctcctcaattaccaacagctcacctccatcaat 15860259  T
Q  156 ttctcttattcccaattccaaaccctaattccaatttcgggttacaaagacacaccaaataccaattggagattctttgtaaaaaatattaggtaattta 255  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| || ||||||||||| |||||| |||||||||||     
T  15860260 ttctcttattcccaattccaaaccctaattccaattacgggatacaaagacaaaccaaataccaagtgaagattctttgttaaaaatcttaggtaatttc 15860359  T
Q  256 atgtttattaatttcaacnnnnnnnnccttcatgttttttgttgctaaatttcttatgtgaagtttgtaagttagannnnnnnncacttccccagtttat 355  Q
    || ||||| |||||||||         ||||||||| ||||||||| ||||||||||||||||||||||| |||||        ||| || |||||||||    
T  15860360 atctttatcaatttcaactttttt---cttcatgttctttgttgcttaatttcttatgtgaagtttgtaatttaga-tttttttcacctctccagtttat 15860455  T
Q  356 aaattagaacatactggtatctaaattggagttgtgaaactcaattgctaaattagtgttgtgaaaaaaattgggg 431  Q
    ||||| | | |||  ||||| ||||||||||||| | ||| |||||| |||||| | ||||| |||||||||||||    
T  15860456 aaatttgtaaataggggtatgtaaattggagttgag-aacccaattgataaattggagttgt-aaaaaaattgggg 15860529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 13075805 - 13075875
Alignment:
Q  357 aattagaacatactggtatctaaattggagttgtgaaactcaattgctaaattagtgttgtgaaaaaaattg 428  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  13075805 aattagaaaatactg-tatctaaattggagttgtgaaacccaattgctaaattagtgttgtgaaaataattg 13075875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 15860238 - 15860286
Alignment:
Q  49 ccaacagctcacctccatcaattcttcttattctcaatttcaaacccta 97  Q
    |||||||||||||||||||||||  |||||||| ||||| |||||||||    
T  15860238 ccaacagctcacctccatcaatttctcttattcccaattccaaacccta 15860286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 25 - 317
Target Start/End: Complemental strand, 13538924 - 13538632
Alignment:
Q  25 tctcacctccatagtttcttccttccaacagctcacc-tccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaattcatccttc 123  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  13538924 tctcacctccat-gtttcttccttccaacagctcaccctccatcaattcttcttattcttaatttcaaaccctgttatcaacaaccccaattcatccttc 13538826  T
Q  124 tcctcaattaccaacagttcatttccatcaatttctcttattcccaattccaaaccctaattccaatttcgggttacaaagacacaccaaataccaattg 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  13538825 tcctcaattaccaacagttcacttccatcaatttctcttattcccaatttcaaaccctaattccaattttgggttacaaagacaaaccaaatactaattg 13538726  T
Q  224 gagattctttgtaaaaaatattaggtaatttaatgtttattaatttcaacnnnnnnnnccttcatgttttttgttgctaaatttcttatgtgaa 317  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||    
T  13538725 gagattctttgtaaaaaatattaggtaatttaatgtttatcaatttcaaatttttttttcttcatgttttttgttgctaaatttcttatgtgaa 13538632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 13404294 - 13404594
Alignment:
Q  18 accaccatctcacctccatagtttcttccttccaacagctcacc-tccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaattc 116  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13404294 accaccatctcacctccat-gtttcttccttccaatagctcaccctccatcaattcttcttattcttaatttcaaaccctgttaccaacaaccccaattc 13404392  T
Q  117 atccttctcctcaattaccaacagttcatttccatcaatttctcttattcccaattccaaaccctaattccaatttcgggttacaaagacacaccaaata 216  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||    
T  13404393 acccttctcctcaattaccaacagttcacttccatcaatttctcttattcccaatttcaagccctaattccaattttgggttacaaagacaaaccaaata 13404492  T
Q  217 ccaattggagattctttgtaaaaaatattaggtaatttaatgtttattaatttcaac-nnnnnnnnccttcatgttttttgttgctaaatttcttatgtg 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||          |||||||||||||||||||||||||||||||||    
T  13404493 ccaattcgagattctttgtaaaaaatattaggtaatttaatgtttatcaatttcaacttttttttttcttcatgttttttgttgctaaatttcttatgtg 13404592  T
Q  316 aa 317  Q
    ||    
T  13404593 aa 13404594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 563 - 761
Target Start/End: Complemental strand, 13538427 - 13538234
Alignment:
Q  563 gttgagttcattagatgataccctaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaataattgcat 662  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13538427 gttgagttcattagatgataccttaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaatgattgcat 13538328  T
Q  663 tcaattatattgtttcattttctcaaattattattggtgtcaacgtgttttcttaaattattatcggtgtcaacgtgttagtgttgtatcgtgtctgtg 761  Q
    |||     |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13538327 tca-----attgtttcattttctcaaattattattgatgtcaacgtattttcttaaattattatcggcgtcaacgtgttagtgttgtatcgtgtctgtg 13538234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 563 - 748
Target Start/End: Original strand, 13404801 - 13404981
Alignment:
Q  563 gttgagttcattagatgataccctaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaataattgcat 662  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13404801 gttgagttcattagatgataccctgagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtataaaatctcagaatgattgcat 13404900  T
Q  663 tcaattatattgtttcattttctcaaattattattggtgtcaacgtgttttcttaaattattatcggtgtcaacgtgttagtgttg 748  Q
    |||     |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13404901 tca-----attgtttcattttctcaaattattattgatgtcaacgtgttttcttaaattattatcggcgtcaacatgttagtgttg 13404981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 13404593 - 13404667
Alignment:
Q  357 aattagaacatactggtatctaaattggagttgtgaaactcaattgctaaattagtgttgtgaaaaaaattgggg 431  Q
    |||||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  13404593 aattagaaaatactgatatctaaattggagctgtgaaacccaattgctaaattagtgttgtgaaaataattgggg 13404667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 13538633 - 13538563
Alignment:
Q  357 aattagaacatactggtatctaaattggagttgtgaaactcaattgctaaattagtgttgtgaaaaaaattg 428  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  13538633 aattagaaaatactg-tatctaaattggagttgtgaaacccaattgctaaattagtgttgtgaaaataattg 13538563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 761
Target Start/End: Original strand, 13404984 - 13405014
Alignment:
Q  731 gtcaacgtgttagtgttgtatcgtgtctgtg 761  Q
    |||||||||||||||||||||||||||||||    
T  13404984 gtcaacgtgttagtgttgtatcgtgtctgtg 13405014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 25 - 317
Target Start/End: Complemental strand, 12826654 - 12826362
Alignment:
Q  25 tctcacctccatagtttcttccttccaacagctcacc-tccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaattcatccttc 123  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  12826654 tctcacctccat-gtttcttccttccaacagctcaccctccatcaattcttcttattcttaatttcaaaccctgttatcaacaaccccaattcatccttc 12826556  T
Q  124 tcctcaattaccaacagttcatttccatcaatttctcttattcccaattccaaaccctaattccaatttcgggttacaaagacacaccaaataccaattg 223  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  12826555 tcctcaattaccaacagttcacttacatcaatttctcttattcccaatttcaaaccctaattccaattttgggttacaaagacaaaccaaatactaattg 12826456  T
Q  224 gagattctttgtaaaaaatattaggtaatttaatgtttattaatttcaacnnnnnnnnccttcatgttttttgttgctaaatttcttatgtgaa 317  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||    
T  12826455 gagattctttgtaaaaaatattaggtaatttaatgtttatcaatttcaaatttttttttcttcatgttttttgttgctaaatttcttatgtgaa 12826362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 563 - 761
Target Start/End: Complemental strand, 12826159 - 12825966
Alignment:
Q  563 gttgagttcattagatgataccctaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaataattgcat 662  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12826159 gttgagttcattagatgataccttaagattcttcaacattttctttaaagttgtttgaacgaaagtatactgtatgtacaaaatctcagaatgattgcat 12826060  T
Q  663 tcaattatattgtttcattttctcaaattattattggtgtcaacgtgttttcttaaattattatcggtgtcaacgtgttagtgttgtatcgtgtctgtg 761  Q
    |||     |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12826059 tca-----attgtttcattttctcaaattattattgatgtcaacgtattttcttaaattattatcggcgtcaacgtgttagtgttgtatcgtgtctgtg 12825966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 25143328 - 25143423
Alignment:
Q  18 accaccatctcacctccatagtttcttccttccaacagctcacc-tccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaa 113  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  25143328 accaccatctcacttccat-gtttcttccctccaacagctcaccctccatcaattcttcttattcttaatttcaaaccccgttaccaacaaccccaa 25143423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 12826363 - 12826293
Alignment:
Q  357 aattagaacatactggtatctaaattggagttgtgaaactcaattgctaaattagtgttgtgaaaaaaattg 428  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  12826363 aattagaaaatactg-tatctaaattggagttgtgaaacccaattgctaaattagtgttgtgaaaataattg 12826293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 671 - 763
Target Start/End: Complemental strand, 12817916 - 12817823
Alignment:
Q  671 attgtttcattttctcaaattattattggtgtcaacgtgttttcttaaattattatc-ggtgtcaacgtgttagtgttgtatcgtgtctgtgct 763  Q
    ||||| ||||| |||||||||||||| | ||||||| |||||||| ||||||||||| | |||||||||||||||||||| ||||||| |||||    
T  12817916 attgtgtcattatctcaaattattatggatgtcaacctgttttctcaaattattatcagttgtcaacgtgttagtgttgtgtcgtgtcggtgct 12817823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 749
Target Start/End: Complemental strand, 34331410 - 34331371
Alignment:
Q  710 ttttcttaaattattatcggtgtcaacgtgttagtgttgt 749  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  34331410 ttttcttaaattattattggtggcaacgtgttagtgttgt 34331371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 4e-77; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 56 - 431
Target Start/End: Original strand, 3395203 - 3395572
Alignment:
Q  56 ctcacctccatcaattcttcttattctcaatttcaaaccctattaccaacaaccccaattcatccttctcctcaattaccaacagttcatttccatcaat 155  Q
    |||||||| |||||||| || ||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||  |||||||||    
T  3395203 ctcacctctatcaattcctcctatacccaattccaaaccctattaccaacagccccatttcatccttctcctcaattaccaacagctcacctccatcaat 3395302  T
Q  156 ttctcttattcccaattccaaaccctaattccaatttcgggttacaaagacacaccaaataccaattggagattctttgtaaaaaatattaggtaattta 255  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| || ||||||||||| |||||| |||||||||||     
T  3395303 ttctcttattcccaattccaaaccctaattccaattacgggatacaaagacaaaccaaataccaagtgaagattctttgttaaaaatcttaggtaatttc 3395402  T
Q  256 atgtttattaatttcaacnnnnnnnnccttcatgttttttgttgctaaatttcttatgtgaagtttgtaagttagannnnnnnncacttccccagtttat 355  Q
    || ||||| |||||||||         ||||||||| ||||||||| | ||||||||||||||||||||| |||||        ||| || |||||||||    
T  3395403 atctttatcaatttcaactttttt---cttcatgttctttgttgcttagtttcttatgtgaagtttgtaatttaga-tttttttcacctctccagtttat 3395498  T
Q  356 aaattagaacatactggtatctaaattggagttgtgaaactcaattgctaaattagtgttgtgaaaaaaattgggg 431  Q
    ||||| | | |||  ||||| ||||||||||||| | ||| |||||| |||||| | ||||| |||||||||||||    
T  3395499 aaatttgtaaataggggtatgtaaattggagttgag-aacccaattgataaattggagttgt-aaaaaaattgggg 3395572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 3395281 - 3395329
Alignment:
Q  49 ccaacagctcacctccatcaattcttcttattctcaatttcaaacccta 97  Q
    |||||||||||||||||||||||  |||||||| ||||| |||||||||    
T  3395281 ccaacagctcacctccatcaatttctcttattcccaattccaaacccta 3395329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 740
Target Start/End: Complemental strand, 31924449 - 31924419
Alignment:
Q  710 ttttcttaaattattatcggtgtcaacgtgt 740  Q
    |||||||||||||||||||||||||||||||    
T  31924449 ttttcttaaattattatcggtgtcaacgtgt 31924419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 748
Target Start/End: Original strand, 3150531 - 3150564
Alignment:
Q  715 ttaaattattatcggtgtcaacgtgttagtgttg 748  Q
    |||||||||||||||||||||||||| |||||||    
T  3150531 ttaaattattatcggtgtcaacgtgtcagtgttg 3150564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 747
Target Start/End: Original strand, 7999124 - 7999161
Alignment:
Q  710 ttttcttaaattattatcggtgtcaacgtgttagtgtt 747  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  7999124 ttttcttaaactattatcggtgtctacgtgttagtgtt 7999161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 675 - 710
Target Start/End: Original strand, 7250994 - 7251029
Alignment:
Q  675 tttcattttctcaaattattattggtgtcaacgtgt 710  Q
    ||||||||||||||||||||||||||||||||||||    
T  7250994 tttcattttctcaaattattattggtgtcaacgtgt 7251029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 712
Target Start/End: Original strand, 15109598 - 15109634
Alignment:
Q  676 ttcattttctcaaattattattggtgtcaacgtgttt 712  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15109598 ttcattttctcaaattattattggtgtcaacatgttt 15109634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 678 - 710
Target Start/End: Complemental strand, 11815854 - 11815822
Alignment:
Q  678 cattttctcaaattattattggtgtcaacgtgt 710  Q
    |||||||||||||||||||||||||||||||||    
T  11815854 cattttctcaaattattattggtgtcaacgtgt 11815822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 707 - 740
Target Start/End: Original strand, 41542504 - 41542537
Alignment:
Q  707 gtgttttcttaaattattatcggtgtcaacgtgt 740  Q
    ||||||||| ||||||||||||||||||||||||    
T  41542504 gtgttttctcaaattattatcggtgtcaacgtgt 41542537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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