View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_high_25 (Length: 326)

Name: NF20365_high_25
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_high_25
NF20365_high_25
[»] chr8 (10 HSPs)
chr8 (198-315)||(5355970-5356091)
chr8 (68-143)||(5355869-5355946)
chr8 (21-68)||(2744043-2744090)
chr8 (22-68)||(7839238-7839284)
chr8 (23-68)||(4125010-4125055)
chr8 (21-68)||(13468729-13468776)
chr8 (25-68)||(39086862-39086905)
chr8 (29-68)||(12958077-12958116)
chr8 (21-68)||(30936114-30936161)
chr8 (25-57)||(19715713-19715745)
[»] chr2 (9 HSPs)
chr2 (21-68)||(17981607-17981654)
chr2 (21-68)||(31579213-31579260)
chr2 (21-68)||(42745100-42745147)
chr2 (23-68)||(25423854-25423899)
chr2 (21-66)||(37092179-37092224)
chr2 (26-68)||(5394506-5394548)
chr2 (26-68)||(14551584-14551626)
chr2 (23-64)||(37179987-37180028)
chr2 (24-64)||(1682136-1682176)
[»] scaffold0182 (1 HSPs)
scaffold0182 (21-68)||(26441-26488)
[»] chr7 (12 HSPs)
chr7 (21-68)||(31492213-31492260)
chr7 (21-68)||(29059915-29059962)
chr7 (23-68)||(37339719-37339764)
chr7 (24-68)||(28665200-28665244)
chr7 (21-68)||(11486728-11486775)
chr7 (21-68)||(35707956-35708003)
chr7 (21-68)||(20207607-20207654)
chr7 (21-67)||(28537497-28537543)
chr7 (26-68)||(36821069-36821111)
chr7 (23-56)||(14552482-14552515)
chr7 (23-64)||(42741795-42741836)
chr7 (27-67)||(32470029-32470069)
[»] chr4 (11 HSPs)
chr4 (21-68)||(31307050-31307097)
chr4 (23-66)||(51626292-51626335)
chr4 (23-68)||(9012380-9012425)
chr4 (23-68)||(38766199-38766244)
chr4 (20-64)||(14854719-14854763)
chr4 (25-61)||(15133492-15133528)
chr4 (21-68)||(32005130-32005177)
chr4 (24-68)||(45994632-45994676)
chr4 (25-63)||(35972458-35972496)
chr4 (25-55)||(37241364-37241394)
chr4 (32-68)||(13948587-13948623)
[»] chr3 (12 HSPs)
chr3 (21-68)||(8757454-8757501)
chr3 (27-68)||(30995955-30995996)
chr3 (23-68)||(40318435-40318480)
chr3 (24-68)||(20861358-20861402)
chr3 (21-68)||(25224809-25224856)
chr3 (21-68)||(27763831-27763878)
chr3 (25-68)||(55123207-55123250)
chr3 (23-68)||(48204297-48204342)
chr3 (27-67)||(44941255-44941294)
chr3 (23-57)||(38331249-38331283)
chr3 (23-68)||(43621297-43621342)
chr3 (24-68)||(39950322-39950366)
[»] chr1 (11 HSPs)
chr1 (23-68)||(15642565-15642610)
chr1 (25-68)||(42297430-42297473)
chr1 (26-68)||(16756192-16756234)
chr1 (23-68)||(18428128-18428173)
chr1 (21-68)||(28724782-28724829)
chr1 (21-68)||(36806721-36806768)
chr1 (27-68)||(49071687-49071728)
chr1 (25-64)||(7242795-7242834)
chr1 (25-68)||(32534192-32534235)
chr1 (25-68)||(44913219-44913262)
chr1 (19-63)||(22022235-22022279)
[»] chr5 (7 HSPs)
chr5 (24-68)||(5123485-5123529)
chr5 (23-68)||(10592037-10592082)
chr5 (22-57)||(22187983-22188018)
chr5 (23-64)||(31113448-31113489)
chr5 (25-57)||(30784974-30785006)
chr5 (21-68)||(25983775-25983822)
chr5 (24-69)||(29553648-29553693)
[»] chr6 (6 HSPs)
chr6 (24-68)||(28099353-28099397)
chr6 (21-68)||(12836881-12836928)
chr6 (27-68)||(9536877-9536918)
chr6 (21-68)||(12411258-12411305)
chr6 (27-68)||(31412232-31412273)
chr6 (25-57)||(21910325-21910357)
[»] scaffold0009 (1 HSPs)
scaffold0009 (24-67)||(27212-27255)
[»] scaffold0013 (1 HSPs)
scaffold0013 (23-68)||(29138-29183)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 5355970 - 5356091
Alignment:
Q  198 aattgaatattagttataaacactccgtccggcaatatttcagaagttacgtgcatggttaataaattggcacgctttcctcgtgcagacaact----ca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  5355970 aattgaatattagttataaacactccgtccggcaatatttcagaagttacgtgcatggttaataaattggcacgctttcctcgtgcagacaactcacaca 5356069  T
Q  294 cacaccaaacgttggccccttt 315  Q
    ||||||||||||||||||||||    
T  5356070 cacaccaaacgttggccccttt 5356091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 5355869 - 5355946
Alignment:
Q  68 tcaaatactccatccagtcaatatacacata--aattacaaaagttaaaagtacgatagcgaatagttaatttgtacc 143  Q
    ||||||||||||| | ||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  5355869 tcaaatactccattctgtccatatacacatataaattacaaaagttaaaagtacgttagcgaatagttaatttgtacc 5355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 2744090 - 2744043
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2744090 accgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 2744043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 7839238 - 7839284
Alignment:
Q  22 ccgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  7839238 ccgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 7839284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 4125010 - 4125055
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  4125010 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 4125055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 13468729 - 13468776
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||    
T  13468729 accgggtatcctccgtgcgcaactgcggagactaatccttcgagcatt 13468776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 39086905 - 39086862
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  39086905 ggtatcctccgcgtgcaactgcggagactaatccctcgagcatt 39086862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 12958077 - 12958116
Alignment:
Q  29 tcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcatt 12958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30936161 - 30936114
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||| | |||||||||||||||||||||||||| ||||| ||||    
T  30936161 accgggtaacatccgcgcgcaactgcggagactaatccctcgaacatt 30936114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 19715713 - 19715745
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatc 57  Q
    ||||| |||||||||||||||||||||||||||    
T  19715713 ggtattctccgcgcgcaactgcggagactaatc 19715745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 17981654 - 17981607
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17981654 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 17981607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 31579213 - 31579260
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  31579213 accgggtatcctccgcgcgcaactgcggaaactaattcctcgagcatt 31579260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 42745100 - 42745147
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  42745100 accgggtatcctccgcgcgcaactgctgagactaatccctcgaccatt 42745147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 25423899 - 25423854
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||    
T  25423899 cgggtatcctccacgcgcaactgctgagactaatccctcgagcatt 25423854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 37092179 - 37092224
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagca 66  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||    
T  37092179 accgggtatcctccgtgcacaactgcggagactaatccctcgagca 37092224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 5394548 - 5394506
Alignment:
Q  26 gtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||| ||||||||||||||||||| | ||||||||    
T  5394548 gtatcctccgcgtgcaactgcggagactaatcccacgagcatt 5394506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 14551626 - 14551584
Alignment:
Q  26 gtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||    
T  14551626 gtatcctctgcgcgcaactgcggagattaatccctcgagcatt 14551584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 37179987 - 37180028
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgag 64  Q
    |||||||||||||||||||| |||| ||||||||| ||||||    
T  37179987 cgggtatcctccgcgcgcaagtgcgtagactaatccctcgag 37180028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 1682176 - 1682136
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgag 64  Q
    |||||||||| | ||||||||||||||||||||| ||||||    
T  1682176 gggtatcctctgtgcgcaactgcggagactaatccctcgag 1682136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 26488 - 26441
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26488 accgggtatcctccgcgcgcaactgcggagactaatctctcgaacatt 26441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 31492260 - 31492213
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31492260 accgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 31492213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 29059962 - 29059915
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  29059962 accgggtatcctccgcgcgcaactgcggagactaatccctcaagcatt 29059915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 37339719 - 37339764
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  37339719 cgggtatcctccgtgcgcaactgcggagactaatccctcgagcatt 37339764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 28665244 - 28665200
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  28665244 gggtatcctccgcgtgcaactgcggagactaatccctcgagcatt 28665200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 11486728 - 11486775
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||    
T  11486728 accgggtatcctccgcgcgcaactgtagagactaatctcttgagcatt 11486775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 35708003 - 35707956
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  35708003 accgggtatcctccacgcgcaactgcagagactaatccctcgagcatt 35707956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 20207654 - 20207607
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||| |||||||| | ||||||||||||||||||||| ||||||||||    
T  20207654 accgagtatcctctgtgcgcaactgcggagactaatccctcgagcatt 20207607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 28537543 - 28537497
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcat 67  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||    
T  28537543 accgggtatccttcgcgtgcaactgcggagactaatccctcaagcat 28537497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 36821069 - 36821111
Alignment:
Q  26 gtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||| |||||||||||| |||||||||| ||||||||||    
T  36821069 gtatcctctgcgcgcaactgcagagactaatccctcgagcatt 36821111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 14552515 - 14552482
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaat 56  Q
    ||||||||||| ||||||||||||||||||||||    
T  14552515 cgggtatcctctgcgcgcaactgcggagactaat 14552482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 42741795 - 42741836
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgag 64  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  42741795 cgggtatcctccgcgcgcaactgcagagattaatccctcgag 42741836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 32470069 - 32470029
Alignment:
Q  27 tatcctccgcgcgcaactgcggagactaatctctcgagcat 67  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  32470069 tatcctccgcgtgcaactgcgaacactaatctctcgagcat 32470029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 31307050 - 31307097
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31307050 accgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 31307097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 51626292 - 51626335
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagca 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  51626292 cgggtatcctccgcgcgcaactgcggagactaatctctcgagca 51626335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 9012425 - 9012380
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  9012425 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 9012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 38766244 - 38766199
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  38766244 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 38766199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 14854763 - 14854719
Alignment:
Q  20 taccgggtatcctccgcgcgcaactgcggagactaatctctcgag 64  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||    
T  14854763 taccgggtatcctccgcgcgcaactgcagagactaatccctcgag 14854719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 15133528 - 15133492
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctc 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctc 15133492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 32005130 - 32005177
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||  || |||||||||||||||||||||||||    
T  32005130 accgggtatcctccgcgcataattgcggagactaatctctcgagcatt 32005177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 45994676 - 45994632
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||    
T  45994676 gggtatccttggcgtgcaactgcggagactaatctctcgagcatt 45994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 35972496 - 35972458
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcga 63  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  35972496 ggtatcctccgcacgcaactgcggagactaatccctcga 35972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 37241364 - 37241394
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaa 55  Q
    |||||||||||||||||||||||||||||||    
T  37241364 ggtatcctccgcgcgcaactgcggagactaa 37241394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 13948587 - 13948623
Alignment:
Q  32 tccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcatt 13948623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 8757501 - 8757454
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8757501 accgggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 8757454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 30995955 - 30995996
Alignment:
Q  27 tatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  30995955 tatcctccgcgcgcaactgcggagactaatccctcgagcatt 30995996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 40318435 - 40318480
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  40318435 cgggtatcctccgcgcgcaactgcggagactaatccctcgaacatt 40318480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 20861402 - 20861358
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  20861402 gggtatcctccgcgcacaactgcggagactaatccctcgagcatt 20861358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 25224856 - 25224809
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||    
T  25224856 accgggtatcctccgcgtgcaactgcggagactaatcccttgagcatt 25224809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 27763878 - 27763831
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  27763878 accggatatcctctgcgcgcaactgcggagactaatccctcgagcatt 27763831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 55123250 - 55123207
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  55123250 ggtatcctccgcgcgcaactgcgaagactaatccctcgagcatt 55123207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 48204297 - 48204342
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||| ||||||| || |||||||    
T  48204297 cgggtatcctccgcgcgcaactgcggaaactaatcccttgagcatt 48204342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 44941255 - 44941294
Alignment:
Q  27 tatcctccgcgcgcaactgcggagactaatctctcgagcat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  44941255 tatcctccgcgcgcaactgcggagactaatc-ctcgagcat 44941294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 38331283 - 38331249
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatc 57  Q
    ||||||||||||||| |||||||||||||||||||    
T  38331283 cgggtatcctccgcgtgcaactgcggagactaatc 38331249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 43621297 - 43621342
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||| |||||||||| | |||||||||| ||||||||||    
T  43621297 cgggtatcctctgcgcgcaactacagagactaatccctcgagcatt 43621342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 39950366 - 39950322
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||  |||||||||||||||||||  |||||||||    
T  39950366 gggtatcctccgcatgcaactgcggagactaatccttcgagcatt 39950322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 15642610 - 15642565
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  15642610 cgggtatcctccgcgcgcaactgcggagaataatctctcgagcatt 15642565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 42297430 - 42297473
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 42297473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 16756234 - 16756192
Alignment:
Q  26 gtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  16756234 gtatcctccgcgcgcaactgcggagactaatccctcgagcatt 16756192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 18428128 - 18428173
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  18428128 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcatt 18428173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 28724829 - 28724782
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  28724829 accgggtatcctccgcgcgcaattgcggagactaatccctcgaacatt 28724782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 36806768 - 36806721
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  36806768 accgggtatcctccgcgtgcaactgcagagactaatccctcgagcatt 36806721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 49071728 - 49071687
Alignment:
Q  27 tatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  49071728 tatcttccgcacgcaactgcggagactaatctctcgagcatt 49071687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 7242795 - 7242834
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcgag 64  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  7242795 ggtatcttccgcgcgcaactgcggagactaatccctcgag 7242834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 32534235 - 32534192
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||    
T  32534235 ggtatcctctgcgcgcaattgcggagactaacctctcgagcatt 32534192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 44913262 - 44913219
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||    
T  44913262 ggtatcctctgcgcgtaactgcagagactaatctctcgagcatt 44913219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 22022279 - 22022235
Alignment:
Q  19 ataccgggtatcctccgcgcgcaactgcggagactaatctctcga 63  Q
    |||| ||||||||||| || ||||||||||||||||||| |||||    
T  22022279 atactgggtatcctccacgtgcaactgcggagactaatccctcga 22022235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 5123485 - 5123529
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  5123485 gggtatcctccgcgcgcaactgcggagactaatccctcgagcatt 5123529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 10592082 - 10592037
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  10592082 cgggtatcctccgcgcgcaactgcagagactaatccctcgagcatt 10592037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 22187983 - 22188018
Alignment:
Q  22 ccgggtatcctccgcgcgcaactgcggagactaatc 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  22187983 ccgggtatcctccgcgcgcaactgcggagactaatc 22188018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 31113489 - 31113448
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgag 64  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  31113489 cgggtatccttcgcgcgcaactgcggagactaatccctcgag 31113448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 30784974 - 30785006
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatc 57  Q
    |||||||||||||||||||||||||||||||||    
T  30784974 ggtatcctccgcgcgcaactgcggagactaatc 30785006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 25983822 - 25983775
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||    
T  25983822 accgggtatcctccgtgtgcaactgcggagactaatcactcgaacatt 25983775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 29553693 - 29553648
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcattc 69  Q
    ||||||||||| ||| ||||||| ||||||||||||| ||||||||    
T  29553693 gggtatcctccacgcacaactgcagagactaatctcttgagcattc 29553648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 28099397 - 28099353
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  28099397 gggtatcctccgctcgcaactgcggagactaatccctcgagcatt 28099353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 12836881 - 12836928
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  12836881 accgggtatcctccgcgcgcaactggggagactaatccctcaagcatt 12836928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 9536918 - 9536877
Alignment:
Q  27 tatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcatt 9536877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 12411305 - 12411258
Alignment:
Q  21 accgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| ||||||    
T  12411305 accgggtatcccccgcgcgcaactgtggagactaatccctcaagcatt 12411258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 31412273 - 31412232
Alignment:
Q  27 tatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||| ||||||||| |||||||||| |||||||||||    
T  31412273 tatcctccgtgcgcaactgtggagactaatttctcgagcatt 31412232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 21910357 - 21910325
Alignment:
Q  25 ggtatcctccgcgcgcaactgcggagactaatc 57  Q
    ||||||||||||| |||||||||||||||||||    
T  21910357 ggtatcctccgcgtgcaactgcggagactaatc 21910325  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 27212 - 27255
Alignment:
Q  24 gggtatcctccgcgcgcaactgcggagactaatctctcgagcat 67  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  27212 gggtatcctccgcgcgcaactgcgaagactaatccctcgagcat 27255  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 29138 - 29183
Alignment:
Q  23 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcatt 68  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||    
T  29138 cgggtatcctccgcgcgcaactgtggagactaatcccacgagcatt 29183  T

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