View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_high_29 (Length: 309)
Name: NF20365_high_29
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 37517116 - 37517409
Alignment:
| Q |
18 |
gaagatcaataacaaatgtaaacacactttcatcgacttttcgtgaccaatgtaaacgtttgaaacaatcaagtgtctcaaattataaatgttctacaac |
117 |
Q |
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| T |
37517116 |
gaagatcagtaacaaaagtaaacacactttcatcgaattttcgtgaccaatgtaaacgtttgaaacaatcaagtgtctcaaattataaatgttctacaac |
37517215 |
T |
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| Q |
118 |
cagctaaatttgtctttctgcactttctagcagcaaatagtcatatactcatatttaacataacacttgaaatctgtaacacttttcttatatgg--tta |
215 |
Q |
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| T |
37517216 |
cagctaaatttgtctttctgcactttctagcagtaaatagtcatatactcatatttaacataacacttgaaatctgtaacacttttcgtatatggtttta |
37517315 |
T |
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| Q |
216 |
tacaatcaacgtcagtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgt |
309 |
Q |
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| T |
37517316 |
tataatcaacgtcagtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgt |
37517409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 14843286 - 14843566
Alignment:
| Q |
18 |
gaagatcaataacaaatgtaaacacactttcatcgacttttcgtgaccaatgtaaacgtttgaaacaatcaagtgtctcaaattataaatgttctacaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14843286 |
gaagatcaataacaaatgtaaacacactttcatcgaattttcgtgaccaatgtaaacgtttgaaacaatcaagtgtctcaaattataaatgttctacaac |
14843385 |
T |
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| Q |
118 |
cagctaaatttgtctttctgcactttctagcagcaaatagtcatatactcatatttaacataacacttgaaatctgtaacacttttcttatatggttata |
217 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14843386 |
cagctaaatttgtctttctgcactttctagcagtaa-----------ctcatatttaacataacacttgaaatctgtaacacttttcgtatatggttata |
14843474 |
T |
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| Q |
218 |
caatcaacgtcagtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14843475 |
taatcaacgtcagtccacagttcacttcagcaaaatcaatatcttcatagactatattgatttaaaccaaccactcaaatattacagaatgt |
14843566 |
T |
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