View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_high_30 (Length: 308)

Name: NF20365_high_30
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_high_30
NF20365_high_30
[»] chr1 (11 HSPs)
chr1 (19-295)||(14501602-14501877)
chr1 (19-289)||(14534899-14535166)
chr1 (145-215)||(15000545-15000615)
chr1 (145-215)||(15009157-15009227)
chr1 (145-215)||(15023274-15023344)
chr1 (64-148)||(15009058-15009141)
chr1 (64-148)||(15023175-15023258)
chr1 (153-199)||(15015581-15015627)
chr1 (246-295)||(15035151-15035200)
chr1 (224-295)||(15023373-15023444)
chr1 (224-277)||(15009256-15009309)
[»] scaffold0400 (1 HSPs)
scaffold0400 (222-283)||(5102-5163)
[»] scaffold0365 (1 HSPs)
scaffold0365 (222-283)||(5746-5807)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 14501602 - 14501877
Alignment:
Q  19 ttaaactcattatctcgccctattaccccaacctcgtgnnnnnnnatcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtgaacgag 118  Q
    |||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14501602 ttaaactcattatctcgccctattactccaacctcgtgtttctg-atcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtgaacgag 14501700  T
Q  119 tttaatcagcccaagtcttcactatgacaatgcattataaatatcacctacatttcccattataatgcatgcatcataatataagtgtctagttcaaaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14501701 tttaatcagcccaagtcttcactatgacaatgcattataaatatcacctacatttcccattataatgcattcatcataatataagtgtctagttcaaaat 14501800  T
Q  219 tttactttcattgtgttcaaattttcaaaatgcttcagaagatgaagctcttaccaatgttgtgtcctcttttgttc 295  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | ||||||||    
T  14501801 tatactttcattgtgttcaaattttcaaaatgcttcagaagataaagctcttaccaatgtcgtgtcttattttgttc 14501877  T

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Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 14535166 - 14534899
Alignment:
Q  19 ttaaactcattatctcgccctattaccccaacctcgtgnnnnnnnatcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtgaacgag 118  Q
    |||||||||||||||| ||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14535166 ttaaactcattatctcaccctattactccaacctcgtgtttctg-atcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtgaacgag 14535068  T
Q  119 tttaatcagcccaagtcttcactatgacaatgcattataaatatcacctacatttcccattataatgcatgcatcataatataagtgtctagttcaaaat 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |  |||    
T  14535067 tttaatcagcccaagtcttcactatgataatgcattataaatatcacctacatttcccattataatgcattcatcataatacaagtgtctagtgc--aat 14534970  T
Q  219 tttactttcattgtgttcaaattttcaaaatgcttcagaagatgaagctcttaccaatgttgtgtcctctt 289  Q
    | |||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  14534969 tatactttcattgtcttcacattttcaaaatgcttaagaagataaagctcttaccaatgttgtgtactctt 14534899  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 15000545 - 15000615
Alignment:
Q  145 acaatgcattataaatatcacctacatttcccattataatgcatgcatcataatataagtgtctagttcaa 215  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  15000545 acaaagcattataaatatcacctacatctcccattataatgcattcatcataatataagtgtctagttcaa 15000615  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 15009157 - 15009227
Alignment:
Q  145 acaatgcattataaatatcacctacatttcccattataatgcatgcatcataatataagtgtctagttcaa 215  Q
    |||||||||||||||||||||||| || ||||||| |||||||| |||||| ||| |||||||||||||||    
T  15009157 acaatgcattataaatatcacctaaatctcccattgtaatgcattcatcatgatacaagtgtctagttcaa 15009227  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 15023274 - 15023344
Alignment:
Q  145 acaatgcattataaatatcacctacatttcccattataatgcatgcatcataatataagtgtctagttcaa 215  Q
    |||||||||||||||||||||||| || ||||||| |||||||| |||||| ||| |||||||||||||||    
T  15023274 acaatgcattataaatatcacctaaatctcccattgtaatgcattcatcatgatacaagtgtctagttcaa 15023344  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 15009058 - 15009141
Alignment:
Q  64 atcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtgaacgagtttaatcagcccaagtcttcactatgacaa 148  Q
    ||||||||||| ||||||||||| ||||||||   |||||||||||||||| || |||||| || | ||||||||||||| ||||    
T  15009058 atcaaaaccacaataataagtctaagtcttcaccttaaagacaaaagtgaaagactttaatgag-ctaagtcttcactattacaa 15009141  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 15023175 - 15023258
Alignment:
Q  64 atcaaaaccaccataataagtctcagtcttcatactaaagacaaaagtgaacgagtttaatcagcccaagtcttcactatgacaa 148  Q
    ||||||||||| ||||||||||| ||||||||   |||||||||||||||| || |||||| || | ||||||||||||| ||||    
T  15023175 atcaaaaccacaataataagtctaagtcttcaccttaaagacaaaagtgaaagactttaatgag-ctaagtcttcactattacaa 15023258  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 15015581 - 15015627
Alignment:
Q  153 ttataaatatcacctacatttcccattataatgcatgcatcataata 199  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  15015581 ttataaatatcacctgcatctcccattataatgcattcatcataata 15015627  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 15035151 - 15035200
Alignment:
Q  246 aaatgcttcagaagatgaagctcttaccaatgttgtgtcctcttttgttc 295  Q
    |||||||||||| ||||||| |||||||||||| ||||| ||||||||||    
T  15035151 aaatgcttcagaggatgaagttcttaccaatgtcgtgtcttcttttgttc 15035200  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 15023373 - 15023444
Alignment:
Q  224 tttcattgtgttcaaattttcaaaatgcttcagaagatgaagctcttaccaatgttgtgtcctcttttgttc 295  Q
    |||||||||||| |||||| |||||| ||||| |  |||||||||||||||||||  |||| | ||||||||    
T  15023373 tttcattgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatgtcatgtcttattttgttc 15023444  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 15009256 - 15009309
Alignment:
Q  224 tttcattgtgttcaaattttcaaaatgcttcagaagatgaagctcttaccaatg 277  Q
    |||||||||||| |||||| |||||| ||||| |  ||||||||||||||||||    
T  15009256 tttcattgtgttgaaatttccaaaatacttcaaagaatgaagctcttaccaatg 15009309  T

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Target: scaffold0400 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 5102 - 5163
Alignment:
Q  222 actttcattgtgttcaaattttcaaaatgcttcagaagatgaagctcttaccaatgttgtgt 283  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||| ||||||| ||||||||    
T  5102 actttctttgtgtccaaatttccaaaatgtttcagaagatgaagcccttaccattgttgtgt 5163  T

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Target: scaffold0365 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 5746 - 5807
Alignment:
Q  222 actttcattgtgttcaaattttcaaaatgcttcagaagatgaagctcttaccaatgttgtgt 283  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||| ||||||| ||||||||    
T  5746 actttctttgtgtccaaatttccaaaatgtttcagaagatgaagcccttaccattgttgtgt 5807  T

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