View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_high_32 (Length: 303)

Name: NF20365_high_32
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_high_32
NF20365_high_32
[»] chr1 (1 HSPs)
chr1 (7-290)||(37525817-37526110)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 37526110 - 37525817
Alignment:
Q  7 atgaagatgataaagaaaggggccctgagagtgaggtgttgtacgtaaaaga----------gagtgagggagatgcttttttcatttacttgaattgaa 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||||||||||||||||||||||||||    
T  37526110 atgaagatgataaagaaaggggccctgagagtgaggtgttgtacgtaaaagaaagagtgagggagagagggagatgcttttttcatttacttgaattgaa 37526011  T
Q  97 ttgaaatgaaaggcaaataataacacaaatactacataacagtggtggcaatcatgttgacaagaccactgcacctcttttatgcagactacagagcttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37526010 ttgaaatgaaaggcaaataataacacaaatactacataacagtggtggcaatcatgttgacaagaccactgcacctcttttatgcagactacagagcttg 37525911  T
Q  197 catccgtcatccacgaccctactacactatcaatgtgccgtgactgtagacagttttcactgtctcttcttatttgaggtctaaccattgttgt 290  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525910 catccgtcatccacgaccctactactctatcattgtgccgtgactgtagacagttttcactgtctcttcttatttgaggtctaaccattgttgt 37525817  T

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