View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_high_35 (Length: 285)
Name: NF20365_high_35
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 24640306 - 24640563
Alignment:
| Q |
11 |
agcagagaaaaatcttacaatgagtgcaaggagacctctaaaaagaatcatccctacgataggtgaaaaacaggttgcataatgtcgcttcaggtttgct |
110 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640306 |
agcacagaaaaatcttacaatgagtgtaaggagacctctaaaaagaatcatccctacgataggtgaaaaacaggttgcataatgtcgcttcaggtttgct |
24640405 |
T |
|
| Q |
111 |
gaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtgacaaaccactta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640406 |
gaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtgacaaaccactta |
24640505 |
T |
|
| Q |
211 |
ttaaatccctaaattgtgataaaagaaaaacatgaattgcaaaatatacatgaaaact |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24640506 |
ttaaatccctaaattgtgataaaagaaaaacatgaattgcaaaatatacatgaaaact |
24640563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 24675410 - 24675664
Alignment:
| Q |
16 |
agaaaaatcttacaatgagtgcaaggagacctctaaaaagaatcatccctacgataggtgaaaaacaggttgcataatgtcgcttcaggtttgctgaact |
115 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||| | ||| | |||||||||| |||||||||| ||||||||||||||||||| |
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| T |
24675410 |
agaaaaatcttacaatgactgcaaggagacctttaaaaagaatcatcccagctatatgagaaaaacaggctgcataatgtggcttcaggtttgctgaact |
24675509 |
T |
|
| Q |
116 |
ctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtgacaaaccacttattaaa |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||| ||||||| || |||||||| |
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| T |
24675510 |
ctgcaaataatacacgtattaactaccatttttcgaaacagtttcaatgaattgtaagttcttcacgctcctcaagtacaatgacaaatcaattattaaa |
24675609 |
T |
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| Q |
216 |
tccctaaattgtg----ataaaagaaaaacatgaattgcaaaatatacatgaaaa |
266 |
Q |
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||||||||||||| | |||| ||||||||||||||||| | ||||||||||| |
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| T |
24675610 |
tccctaaattgtgagacaaaaaaaaaaaacatgaattgcaagaaatacatgaaaa |
24675664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 24691545 - 24691761
Alignment:
| Q |
49 |
taaaaagaatcatccctacgataggtgaaaaacaggttgcataatgtcgcttcaggtttgctgaactctgcaaataatacatgtattaactaccattttt |
148 |
Q |
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|||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| ||| |
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| T |
24691545 |
taaaaagaatcatcccagcgatatgagaaaaacagattgcataatgtggcttcaggtttgccgaactctgcaaataatacaagtattaactaccatattt |
24691644 |
T |
|
| Q |
149 |
cgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtgacaaaccacttattaaatccctaaattgtgataaaagaaaaacatgaatt |
248 |
Q |
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||||||||||| ||| |||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||||| ||||||||||||| |||| |
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| T |
24691645 |
cgaaacagttgcaatgaattgtaagttcttcatgctccttaagtacaatgacagaccaattattaaatccataaattgtgagaaaagaaaaacat-aatt |
24691743 |
T |
|
| Q |
249 |
gcaaaatatacatgaaaa |
266 |
Q |
| |
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| T |
24691744 |
gtaaaatatacatgaaaa |
24691761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 103 - 266
Target Start/End: Original strand, 24718956 - 24719120
Alignment:
| Q |
103 |
ggtttgctgaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtgacaa |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| |||||| ||||||| |||||| |
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| T |
24718956 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattcttcatgctcctcaagtacaatgacaa |
24719055 |
T |
|
| Q |
203 |
accacttattaaatccctaaattgtgataaa-agaaaaacatgaattgcaaaatatacatgaaaa |
266 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| | |||| ||||||||||||| ||||| ||||| |
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| T |
24719056 |
accaattattaaatccctaaattgtaaaaaatggtaaaatatgaattgcaaaaaatacaagaaaa |
24719120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 24652352 - 24652530
Alignment:
| Q |
76 |
aaaaacaggttgcataatgtcgcttcaggtttgctgaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaatt |
175 |
Q |
| |
|
|||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||| ||| ||| |
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| T |
24652352 |
aaaaacaggttgcataatattgcttgatttttgctgaactctgcaaataatacatgtattaactacaattttacgaaacagttgcaatgaatcgtacatt |
24652451 |
T |
|
| Q |
176 |
cttcacgctccttaagtacagtgacaaaccacttattaaatccctaaattgtgataaaagaaaaacatgaattgcaaaa |
254 |
Q |
| |
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|||| |||| | ||| ||||||| |||||| |||| || ||||||||||||| ||||||| |||||||||||||||| |
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| T |
24652452 |
cttctggctcatcaagaacagtgaaaaaccaactattcaacccctaaattgtgagaaaagaataacatgaattgcaaaa |
24652530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 266
Target Start/End: Original strand, 24713761 - 24713944
Alignment:
| Q |
83 |
ggttgcataatgtcgcttcaggtttgctgaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattcttcacg |
182 |
Q |
| |
|
||||||||||| | |||| | ||||||||||||||||| || ||||| |||| ||||||||||||||||||| ||| | | || |||||||||||| | |
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| T |
24713761 |
ggttgcataatattgcttgatgtttgctgaactctgcatattatacaagtatcaactaccatttttcgaaacccttgcactaaaatgtaaattcttcctg |
24713860 |
T |
|
| Q |
183 |
ctccttaagtacagtgacaaaccacttattaaatccctaaattgtgataaaagaaaaacatgaattgcaaaatatacatgaaaa |
266 |
Q |
| |
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||| ||||| | | || ||||||| |||||||||||||||||||||| ||||||| || |||||| |||||| ||||||||||| |
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| T |
24713861 |
ctcattaagaataatggcaaaccaattattaaatccctaaattgtgagaaaagaataagatgaatagcaaaaaatacatgaaaa |
24713944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 24686185 - 24686299
Alignment:
| Q |
19 |
aaaatcttacaatgagtgcaaggagacctctaaaaagaatcatccctacgataggtgaaaaacaggttgcataatgtcgcttcaggtttgctgaactctg |
118 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||||| ||| || ||||| | ||||||||||||||||||| | |||| | |||||||||| |||| |
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| T |
24686185 |
aaaatcttacattgggtgcaaggagaccaccaaaaagaaccattccagcgatacgagaaaaacaggttgcataatattgcttgatgtttgctgaattctg |
24686284 |
T |
|
| Q |
119 |
caaataatacatgta |
133 |
Q |
| |
|
||||||||||||||| |
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| T |
24686285 |
caaataatacatgta |
24686299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 24632644 - 24632778
Alignment:
| Q |
102 |
aggtttgctgaactctgcaaataatacatgtatt-aactaccatttttcgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtga- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||| | ||||||||||||| ||| | ||| ||||||| |
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| T |
24632644 |
aggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatctaatgtaaattcttcatgct-atcaagaacagtgat |
24632742 |
T |
|
| Q |
200 |
caaaccacttattaaatccctaaattgtgataaaag |
235 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| |
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|
| T |
24632743 |
aaaaccgattattaaatccctaaattgtgagaaaag |
24632778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 24686296 - 24686394
Alignment:
| Q |
168 |
tgtaaattcttcacgctccttaagtacagtgacaaaccacttattaaatccctaaattgtgataaaagaaaaacatgaattgcaaaatatacatgaaaa |
266 |
Q |
| |
|
||||||||||||| |||| | ||| ||| |||||||||| | |||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
24686296 |
tgtaaattcttcatgctcgtcaagaacaatgacaaaccaataattaaaaccctaaattgtgagaaaagaaaaacatgtattgcaaaaagtacatgaaaa |
24686394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 24717069 - 24717148
Alignment:
| Q |
75 |
gaaaaacaggttgcataatgtcgcttcaggtttgctgaactctgcaaataatacatgtat-taactaccatttttcgaaac |
154 |
Q |
| |
|
||||||| |||| |||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24717069 |
gaaaaactggtt-cataatattgcttgaggtttgctgaactctgcaaataatacatgtatcaaactaccatttttcgaaac |
24717148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 24654621 - 24654702
Alignment:
| Q |
171 |
aaattcttcacgctccttaagtacagtgacaaaccacttattaaatccctaaattgtgataaaagaaaaacatgaattgcaaa |
253 |
Q |
| |
|
|||||||||| |||| | ||| ||| |||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||| |
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| T |
24654621 |
aaattcttcatgctcttcaagaacaatgacaaaccaattattaaat-cctaaattgtaagcaaagaaaaatatgaattgcaaa |
24654702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 4037617 - 4037573
Alignment:
| Q |
51 |
aaaagaatcatccctacgataggtgaaaaacaggttgcataatgt |
95 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||| |
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|
| T |
4037617 |
aaaagaatcatcccaacgatatgagaaaaacaggttgcataatgt |
4037573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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