View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_high_37 (Length: 284)
Name: NF20365_high_37
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 8844107 - 8844271
Alignment:
| Q |
110 |
caacgcctaaccttacgatactcaattgttaccatcaattgacaaattaaatcatgtctaagaacatcttcaacnnnnnnnnn--cgtgtctaacaaaat |
207 |
Q |
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| T |
8844107 |
caacgcctaaccttacaatactcaattgttaccatcaattgacaaattaaatcatgtctaaaaacatcttcaacaaaaaaaaaaacatgtctaacaaaat |
8844206 |
T |
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| Q |
208 |
taaatctataaaatacgactaactcaaatttaaaggcatggtcaaatttaattcacaactagtat |
272 |
Q |
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| T |
8844207 |
taaatctataaaatacgtctaactcaaatttaaaggcatggtcaaatttaattcacaactagtat |
8844271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8843986 - 8844081
Alignment:
| Q |
1 |
ccctcttcttcttttttgaacaa-tgatttccttcttttgactcgataaaccttaataataatcccatnnnnnnnnttaataatcatgtgatgaga |
95 |
Q |
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| T |
8843986 |
ccctcttttttttttttgaacaaatgatttccttcttttgactcgataaaccttaataataatcccataaaaaaaattaataatcatgtgatgaga |
8844081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 4166863 - 4166815
Alignment:
| Q |
226 |
ctaactcaaatttaaaggcatggtcaaatttaattcacaactagtatta |
274 |
Q |
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| T |
4166863 |
ctaactcaaattcataggcatggtcaaatttaattcacaactagcatta |
4166815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 26234360 - 26234408
Alignment:
| Q |
226 |
ctaactcaaatttaaaggcatggtcaaatttaattcacaactagtatta |
274 |
Q |
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| T |
26234360 |
ctaactcaaattcataggcatggtcaaatttaattcacaactagcatta |
26234408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 25345311 - 25345268
Alignment:
| Q |
226 |
ctaactcaaatttaaaggcatggtcaaatttaattcacaactag |
269 |
Q |
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| T |
25345311 |
ctaactcaaatttaaaggcatggttaaatttaattaaaaactag |
25345268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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