View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20365_high_39 (Length: 280)
Name: NF20365_high_39
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 48639808 - 48640060
Alignment:
| Q |
10 |
attatactctttgaacctccaaatggtaaggtgaggcttggactgacttcctaataagcttaattatcgttggctagctagccattgtttcactagaact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48639808 |
attatactctttgaacctccaaatggtaaggtgaggcttggactgacttcctaataagcttaattatcgttggctagctagccattgtttcactagaact |
48639907 |
T |
|
| Q |
110 |
gaccagctgnnnnnnnnnnnnnnnnatctaggcagtacttcatacgggtgattttcgttacagtgaagaaatggcaaacaatcctttactgcagacatgt |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48639908 |
gaccagctgttttttgtttttgtttatctaggcagtacttcatacgggtgattttcgttacagtgaagaaatggcaaacaatcctttactgcagacctgt |
48640007 |
T |
|
| Q |
210 |
cctattcacactttaattcttgacaccacatactgcaacccacaggtaagtcc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48640008 |
cctattcacactttaattcttgacaccacatactgcaacccacaggtaagtcc |
48640060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 135 - 262
Target Start/End: Complemental strand, 23222102 - 23221975
Alignment:
| Q |
135 |
atctaggcagtacttcatacgggtgattttcgttacagtgaagaaatggcaaacaatcctttactgcagacatgtcctattcacactttaattcttgaca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23222102 |
atctaggcagtacttcatacgggtgattttcgttacagtgaagaaatggcaaacaatcctttactgcagacatgtcctattcacactttaattcttgaca |
23222003 |
T |
|
| Q |
235 |
ccacatactgcaacccacaggtaagtcc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
23222002 |
ccacatactgcaacccacaggtaagtcc |
23221975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 6164326 - 6164260
Alignment:
| Q |
11 |
ttatactctttgaacctccaaatggtaaggtgaggcttggactgacttcctaataagcttaattatc |
77 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
6164326 |
ttatactctttgaacctccgaatggtaaggtgaggcttggaccagcttccttataagcttaattatc |
6164260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University