View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_high_40 (Length: 279)
Name: NF20365_high_40
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 19084988 - 19085232
Alignment:
| Q |
17 |
atattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacggatcatgctacgtactataaggctg |
116 |
Q |
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| T |
19084988 |
atattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacgaatcatgctacgtactataaggctg |
19085087 |
T |
|
| Q |
117 |
aaaaagggagagtaacagaagaaattgcccctgattctattagttatacatgcaacattttatgttaacaaatattatagttttgattttgataaaaagt |
216 |
Q |
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| T |
19085088 |
aaaaagagagagtaacagaagaaattgcccctgattctattagttatacatgcaacattttatgttaacaaatattatagttttgtttttgataaaaagt |
19085187 |
T |
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| Q |
217 |
ttttatttattcctttctatcaccgtaaagtaatatgtccactag |
261 |
Q |
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| T |
19085188 |
ttttatttattcctttctatcaccgtaaagtaatatgtccactag |
19085232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 7280500 - 7280753
Alignment:
| Q |
8 |
tgtcgaagaatattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacggatcatgctacgtact |
107 |
Q |
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|||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
7280500 |
tgtctaagcatattgaaaatataaaggttgagaatttttaatcttattaagcatgcctttttcaatattgaattttagaatatgaatcatgctacgtact |
7280599 |
T |
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| Q |
108 |
ataaggctgaaaaagggagagtaacagaagaaattgcccctgattctattagttatacatgcaacattttatgttaacaaatattatagttttgattttg |
207 |
Q |
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| T |
7280600 |
ataaggttgaaaaagagagagtaacagaagaaattgccccttattctattagttatacatgcaacattttatcttaacaaatattatagttttgttttag |
7280699 |
T |
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| Q |
208 |
ataaaaagtttttatttattcctttctatcaccgtaaagtaatatgtccactag |
261 |
Q |
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| T |
7280700 |
ataaaaagttaatattttttcctttttatcaccgtaaattaatatgtccactag |
7280753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 12988519 - 12988758
Alignment:
| Q |
17 |
atattgaaaatataaatgttgagaatttttaatcttattaagcatgcctttttgaatattgaattttagaatacggatcatgctacgtactataaggctg |
116 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||| ||| || ||||||||||| |
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| T |
12988519 |
atatttaaaatataaaggttaagaatttttaatcttattaagcaggccttttccaatattgaattttagaatatgaatcatactatgttctataaggctg |
12988618 |
T |
|
| Q |
117 |
aaaaagggagagtaacagaagaaattgcccctgattctattagttatacatgcaacattttatgttaacaaatattatagttttgattttgataaaaagt |
216 |
Q |
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|| || ||||||||||||||||||| | ||||| |||||||||||| ||||||| ||||||| | | |||||||||| ||||| ||||||||||||| |
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| T |
12988619 |
aagaa--gagagtaacagaagaaattactcctgaatctattagttattcatgcaatattttatcctga-aaatattataattttgtttttgataaaaag- |
12988714 |
T |
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| Q |
217 |
ttttatttattcctttctatcaccgtaaagtaatatgtccactag |
261 |
Q |
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| T |
12988715 |
-tttattttttcctttctatcaccgtaaattaatatgtccactag |
12988758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 22747038 - 22747149
Alignment:
| Q |
102 |
cgtactataaggctgaaaaagggagagtaacagaagaaattgcccctgattctattagttatacatgcaacattttatgttaacaaatattatagttttg |
201 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22747038 |
cgtactataaggctgaaaaagagagagtaacagaagaaattgcccctgattctattagttatacatgcaacattttatcttaacaaatattatagttttg |
22747137 |
T |
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| Q |
202 |
attttgataaaa |
213 |
Q |
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||||||||||| |
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| T |
22747138 |
tttttgataaaa |
22747149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 22746993 - 22747035
Alignment:
| Q |
17 |
atattgaaaatataaatgttgagaatttttaatcttattaagc |
59 |
Q |
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| T |
22746993 |
atattgaaaatataaaggttgagaatttttaatcttattaagc |
22747035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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